Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01240 ATGAACGGAACAACACTTTCAATTCCAACACCACAACGACACCACGCTTCGCACTCCATCACGCGAACCACGTTCCGCACATTTGCCCCAACCCAAACCCTCTCCTTCCGCAACCGCACTCGCAGTTTCCGAATCCGATGCTTCTCCGGGAGCGCGCCGCCGCCGCCGGTGGTGGTGGTGGGCTCCGCGAACGCCGACATCTACGTGGAGAGCGAGCGGCTGCCGCGCGAGGGGGAGACGCTGGCGGCGAGGTCCGGCGAGACGCTGGCCGGCGGCAAGGGCGCCAACCAGGCCACGTGCGCCGCCAAGCTCGCCTACCCGACCTACTTCGTCGGGCAGATCGGCGACGACGCCTACGGGAGCCTCGTGGCCGGCGCGCTCCGCGGCGCCGGCGTCCGGCTGGACAACCTGACGGTGGCGGCGTCGGCGCCGACGGGGCACGCGGTGGTGATGCTCCAGTCCGACGGGCAGAACTCCATCATCTACATTGGGGGCGCCAACAGGGAGATTCCCGATCCTGTCATCGCTCAAGTCGCACAGGCTGCAAGCAAAGCTGGTGTGCCAGTGGTGTTGGATGCTGGGGGCATGGAAGGGCCATTTCCGCCACAATTGTTGAACTTTGTTGATATTTTGAGTCCTAATGAAACTGAACTTGCTCGCATTACGGGAATGCCAACGGAAAGTTTTGAAGAGATTGCACAGGCTGCTTTGAAATGCCATGAATTGGGAGTTAAGCAAGTTCTTGTGAAACTTGGGGAGAAAGGATCTGTCCTTTTTGTAGAAGGAGAAAAACCGATTCAGCAGCCTGCCATACTTGCTAAAAATGTCGTTGATACAACTGGTGCTGGTGATACTTTTACTGCTGCTTTTGCTGTGGCCTTGGTTGAGGGCAAGTCCAAAAAGGATTGCCTTAGATTTGCCGCTGCTGCAGCTTGTCTTTGTGTTCAATCAATGAGAATAATCACCAAAGATTCGGACTATCAGGAACAGAATAACTGTGAATGGCAGAGGGAAAGACCCTTGAAAATGGCAACAAGGAAAGAAAAATTCCTTTCAGAGAGCATTTCTGCAAGACGGATTCTTCAGCGCAATAGTTTGTTGTCATTGTAA 1110 0.5541 MNGTTLSIPTPQRHHASHSITRTTFRTFAPTQTLSFRNRTRSFRIRCFSGSAPPPPVVVVGSANADIYVESERLPREGETLAARSGETLAGGKGANQATCAAKLAYPTYFVGQIGDDAYGSLVAGALRGAGVRLDNLTVAASAPTGHAVVMLQSDGQNSIIYIGGANREIPDPVIAQVAQAASKAGVPVVLDAGGMEGPFPPQLLNFVDILSPNETELARITGMPTESFEEIAQAALKCHELGVKQVLVKLGEKGSVLFVEGEKPIQQPAILAKNVVDTTGAGDTFTAAFAVALVEGKSKKDCLRFAAAAACLCVQSMRIITKDSDYQEQNNCEWQRERPLKMATRKEKFLSESISARRILQRNSLLSL 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01240 369 Pfam pfkB family carbohydrate kinase 163 320 IPR011611 -
Cca10g01240 369 MobiDBLite consensus disorder prediction 1 20 - -
Cca10g01240 369 PRINTS Ribokinase signature 158 171 IPR002139 GO:0016301
Cca10g01240 369 PRINTS Ribokinase signature 247 258 IPR002139 GO:0016301
Cca10g01240 369 PRINTS Ribokinase signature 59 80 IPR002139 GO:0016301
Cca10g01240 369 PRINTS Ribokinase signature 86 105 IPR002139 GO:0016301
Cca10g01240 369 Hamap Ribokinase [rbsK]. 55 332 IPR011877 GO:0004747|GO:0006014
Cca10g01240 369 PANTHER SUGAR KINASE 168 323 - -
Cca10g01240 369 PANTHER SUGAR KINASE 55 168 - -
Cca10g01240 369 CDD ribokinase 61 316 IPR011877 GO:0004747|GO:0006014
Cca10g01240 369 SUPERFAMILY Ribokinase-like 55 319 IPR029056 -
Cca10g01240 369 Gene3D - 54 327 IPR029056 -
Cca10g01240 369 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 278 291 IPR002173 GO:0016773
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01240 Cca-Chr10 16361104 16364890 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01240 K00852 - gmx:102666284 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01240 10 16361104 16364890 Cca10g01240 10 16361104 16364890 ECH