Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01230 ATGCAAGCACTAGTAGCATGCTCTCCACTTGTGTATGACGTAGTCAAAGTGAGAGTGCAATCACACACCAATCTTGTTCCAACAACCATTTCTATCAAACCTGATTTGACATCAACCAAATCATCTTCTAAGCTCACACTATCATGTAAGTTTCATCCTCAGCCACTGTTGAACCTTTGCACATCAAAATCACCAAGAATAAGCAGCTGCAAGGTTGGTCCACTTAAGTGTGGCATTTCGTCGAATGGGAGCAGTGCAAATGAAGGTAGAAGTCTTCGGGAATGGTTTGAGCTGGTTGGTGAGGCCTTATCAACGGCACTGCCATTGTGGGTGACCATTGGATGCGTTTTGGGGCTGTTCAAGCCAAGTTCCTTCAATTGGGTCACTCCAAAATTGAACATTGTGGGCCTCTCCATCATCATGCTTGGTATGGGTATGACCCTCACTCTTGATGATCTTCGTGGGGCTCTTTCCATGCCTAAGGAAGTCCTCTCTGGATTTGTCCTTCAGTATTCGGTGATGCCATTATCTGGATTTCTGGTAAGCAAACTGTTGAATCTTCCATCGCATTATGCAGCAGGTTTAATATTAGTTGGGTGTTGTCCAGGAGGCACAGCTAGTAACATTGTTACATATCTTGCACGTGGAAATGTGGCACTTTCTGTGATAATGACAGCTGCAAGCACTATATCTGCCGTGATCATGACTCCTTTTCTGACAGCCAAACTTGCCGGTAAATATGTAGCAGTGGATGCATCTGGCTTATTAATTTCAACATTGCAAGTTGTGCTTTTTCCTGTGTTGGCTGGTGCATTTCTGAATCAGTATTTCCAACCTATTGTTAAAATTGTCTCTCCATTGATGCCTCCCTTGGCTGTAGCAACTGTGGCAATTTTGTGTGGAAATGCTATTTCTCAGAGCTCTTCAACAATCCTTATGTCTGGAGGACAAGTAGTTTTAGCTTCCTCTCTTCTTCATGCTTCAGGTTTTTTCTTTGGTTATGTACTTGCAAGAATGCTTGGCCTAGATGTGTCATCATCACGAACCATATCCATTGAGGTTGGCATGCAGAACTCAGTTCTTGGGGTTGTTCTTGCTACGAAACACTTTGGAGATCCTCTAACCACAGTTCCTTGTGCTGTTTCAAGTGTGTTACACTCAATCTTTGGTAGCATCCTTGCAGGAATTTGGAGACACACTGTGCCTGCTGAGgtgaaactgacggcctcggaggtggccactatcgacaacctcgctgcacttcctcgcccgctggattacaagctcgttctgtcgcttgcgaactcggcatacagggagaggggtttggagagtatcatggggaagaatttgtggcgcgagctcaaacatcgctacaatgtcacagaactcgaggtccccgagcctcaagaggaggatgttccccctctaagggtcagccgaaagaggaaaaggggagcgaaggaggtcggggggacctctgcccctgcggacgccgaggaggtgacctccacggccgctgatgcgagtgcggtggaccttactgagagtccaccgcccaaggaggcccctcaggtggcttttgaggaggtggttcgggctgccaaggtggcgattccggccactgagcaggtcgcccaggctgccaaggtggcaggagatgctgccgaggcggcgacacaagctgccgggcgggtcgtccaggctgccgaggtggcggttccggccaccgagcaggttgttcctactgctgaggcgaggtcggaggttgctattgagtaccttccagatatcgagcaggggacgccggcttccgcctctgttgaggctcgtgaagggggtccgagccgtgaggactcgttgagctccgaggaccaggggttgatagacgaggccgaccccgaggatagtttcgacgctgcccaggtccttctacagagggctatgggcatcctgggccactggaagcctaggtgggctaagcagcaggaggacttggccaagcagcaagaggatctggctaagctgaggggccgacttcaaccctggaaggatgcaaataagatcctgaggaaggagaacaaagctcttagtgttgctgttggtgaggcgaggcggcaagaggtggagcttcggtctgcgcggggcgatcttgcaagggtgcaaaagtctcttgagatcgctttacgatccaacgaggcttatgcttcccaggtgggggagttgcaagagctcgtcgccttctctcggggtcgcgctcgctctttggaggatgaggtaacgtcttctcgcagccaagtgcgggctctggaggacgttgtgacctctcttaagggagagttggcggcggcggctgaggagcgcctccgtagcgaggtcattcttggtggccgtgaggacgagattgccaccttgaaggcggagctcgcggagctggcggcggggaaagcggccacggagaagaggctcgcggaggtcgaacgctccattgtgatggagcacaagaggggctttcaaaaggctgctcgtcaggcacgtctcctggctcccgagttcgacttctcctccttgcatgtggaaaaggtcgtccgctttgggaggctggtcagggaggatgatgtcgatgacagttcgagtggaaatgcctcagcctag 2655 0.1996 MQALVACSPLVYDVVKVRVQSHTNLVPTTISIKPDLTSTKSSSKLTLSCKFHPQPLLNLCTSKSPRISSCKVGPLKCGISSNGSSANEGRSLREWFELVGEALSTALPLWVTIGCVLGLFKPSSFNWVTPKLNIVGLSIIMLGMGMTLTLDDLRGALSMPKEVLSGFVLQYSVMPLSGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYLARGNVALSVIMTAASTISAVIMTPFLTAKLAGKYVAVDASGLLISTLQVVLFPVLAGAFLNQYFQPIVKIVSPLMPPLAVATVAILCGNAISQSSSTILMSGGQVVLASSLLHASGFFFGYVLARMLGLDVSSSRTISIEVGMQNSVLGVVLATKHFGDPLTTVPCAVSSVLHSIFGSILAGIWRHTVPAEVKLTASEVATIDNLAALPRPLDYKLVLSLANSAYRERGLESIMGKNLWRELKHRYNVTELEVPEPQEEDVPPLRVSRKRKRGAKEVGGTSAPADAEEVTSTAADASAVDLTESPPPKEAPQVAFEEVVRAAKVAIPATEQVAQAAKVAGDAAEAATQAAGRVVQAAEVAVPATEQVVPTAEARSEVAIEYLPDIEQGTPASASVEAREGGPSREDSLSSEDQGLIDEADPEDSFDAAQVLLQRAMGILGHWKPRWAKQQEDLAKQQEDLAKLRGRLQPWKDANKILRKENKALSVAVGEARRQEVELRSARGDLARVQKSLEIALRSNEAYASQVGELQELVAFSRGRARSLEDEVTSSRSQVRALEDVVTSLKGELAAAAEERLRSEVILGGREDEIATLKAELAELAAGKAATEKRLAEVERSIVMEHKRGFQKAARQARLLAPEFDFSSLHVEKVVRFGRLVREDDVDDSSSGNASA 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01230 884 Coils Coil 753 787 - -
Cca10g01230 884 Coils Coil 802 829 - -
Cca10g01230 884 MobiDBLite consensus disorder prediction 466 524 - -
Cca10g01230 884 Gene3D - 92 400 IPR038770 -
Cca10g01230 884 Pfam Sodium Bile acid symporter family 135 310 IPR002657 GO:0016020
Cca10g01230 884 MobiDBLite consensus disorder prediction 466 480 - -
Cca10g01230 884 Gene3D - 655 847 - -
Cca10g01230 884 PANTHER SODIUM-BILE ACID COTRANSPORTER 40 405 IPR004710 -
Cca10g01230 884 MobiDBLite consensus disorder prediction 595 631 - -
Cca10g01230 884 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS1, CHLOROPLASTIC-RELATED 40 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01230 Cca-Chr10 16202948 16212127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01230 76 406 Organic Solute Cotransporters AT1G78560 75.831 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01230 K03453 - gmx:100788854 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01230 10 16202948 16212127 Cca10g01230 10 16202948 16212127 ECH