Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01192 ATGGCGCACACGCAAACCCTACCATTCATTCACCAGATCGAATCTCTCGTCTCCGATAAACTTCAAGTGGTTTCGTACAAGTGGCTGAGTCGCAATTACATGGTACCGTCCGATGAGGCAAAAAGGTTGCTTCAGGAGTTTGTGGAAAAACACGAGGCTTGCAGAAGCACAACAAGATTTGATGGGGATTGCTCAGTTCAGGTGTATAGTGTGCAGGCTAGCATTCCAAAGGATCCAGCTGTGCTTTGGAATGCTGAATTCATTCAAGCAGAAGAGCTCTTCAAGCAGCCTTCCTCAGTTGATAATTGTTTGAGGGATAATAGGTTCGGTGGGATCTCTAATTCTTTTGTTCAACGGAATGTGGATGCCTCAACAGTAGTTTCTGCCGCTCCACAATCAAAATCTATAGCAAGTGATGGACCTGCAAAGAGTAACATAGTTCACCAACCTCCTAAAAATATATCACGTGATTCTATTGACAAAATCAATACCAAACCACAGAATGTGGCAAAAGAAGTCAAGATTGAAAGCAATGCAATAGGGAATACTGTTGTTCATGATAACATCAACAAACCTACTGCAGACAAAGAAAAGGCCCTTCCCTTGCCCAAAGGCAAAAAGAAAGTACAAGCTGATAAAAGTGGCTCTGTGACTGGAGGTTCATTAACAAGCTTATGGGGTTGTGCATCTGCAAAACCCAAGCCTTGCTCCCCACCAGCAGAAAATAACACAATTTCAAATCCTTCTGTGTCTACTGAAGATGGGCAAACTTCTGCTCATGAAGCAGAAGAGTGTGACAGTGGTAATGATGATAATCATGACATTTCCTTGAGAAGGTCATCCAATAGGAAAAGAAGGGTTGTCTTTGATTTCTCAGATGAAGATGAAGATGTTGTCAATTTAGCATCACCTGATTTCCCAAATAAACAGTCATCTCAAGATTCTAGACAAAATGACAAAACATCATTAGAGAAAGCCAATTTGAATTTTGACGTGCAGGAAGAAAATAAATCAAAGATCAAGGAAGAGAGAACAACTGACAAAAAAGCTCACCAACCACTGAGAGATAATGTATCAGCTATCAGCAAGTGCACAAATAACGGGAAATCATCTTCTGAGAAGTTGCAGAGTTGTAATCCTGAAGTTAGTGTAAATAAGAATAGTGTAAACAATGCTGCTCCATGTTCACCTAAGAGGAGAAAAGTTATGAAGACTAGGATTGATGAACGAGGGAGAGAAGTAACTGAAGTAGTCTGGGAGGGTGAGGAGACAGAAGTGAAGAAACCTGATAAGGTTACAACAAAGAAAGCTGACAGTAATGCACCTTCCAATGCTGTCAATAGTGCTCCAGCAACTAAGAAGCAACCTGCAAATTCAAATGGAAAAGGAGGAAACAAGAAAGCTGGAAACAAGGATCCCAAACAGGGCAATATTCTTTCATTTTTCAAAAGAGTTTGA 1458 0.4074 MAHTQTLPFIHQIESLVSDKLQVVSYKWLSRNYMVPSDEAKRLLQEFVEKHEACRSTTRFDGDCSVQVYSVQASIPKDPAVLWNAEFIQAEELFKQPSSVDNCLRDNRFGGISNSFVQRNVDASTVVSAAPQSKSIASDGPAKSNIVHQPPKNISRDSIDKINTKPQNVAKEVKIESNAIGNTVVHDNINKPTADKEKALPLPKGKKKVQADKSGSVTGGSLTSLWGCASAKPKPCSPPAENNTISNPSVSTEDGQTSAHEAEECDSGNDDNHDISLRRSSNRKRRVVFDFSDEDEDVVNLASPDFPNKQSSQDSRQNDKTSLEKANLNFDVQEENKSKIKEERTTDKKAHQPLRDNVSAISKCTNNGKSSSEKLQSCNPEVSVNKNSVNNAAPCSPKRRKVMKTRIDERGREVTEVVWEGEETEVKKPDKVTTKKADSNAPSNAVNSAPATKKQPANSNGKGGNKKAGNKDPKQGNILSFFKRV 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01192 485 MobiDBLite consensus disorder prediction 358 394 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 257 278 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 304 329 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 300 485 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 330 354 - -
Cca10g01192 485 Coils Coil 323 343 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 132 153 - -
Cca10g01192 485 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 56 119 IPR041913 -
Cca10g01192 485 Gene3D DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 8 55 IPR041913 -
Cca10g01192 485 MobiDBLite consensus disorder prediction 190 211 - -
Cca10g01192 485 Pfam DNA polymerase subunit Cdc27 59 484 IPR019038 GO:0005634|GO:0006260|GO:0043625
Cca10g01192 485 MobiDBLite consensus disorder prediction 186 278 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 401 435 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 132 159 - -
Cca10g01192 485 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 59 484 IPR019038 GO:0005634|GO:0006260|GO:0043625
Cca10g01192 485 PANTHER DNA POLYMERASE DELTA SUBUNIT 3 1 52 IPR019038 GO:0005634|GO:0006260|GO:0043625
Cca10g01192 485 MobiDBLite consensus disorder prediction 436 465 - -
Cca10g01192 485 MobiDBLite consensus disorder prediction 237 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01192 Cca-Chr10 15324256 15329668 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01192 K03504 - gmx:100812372 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01192 10 15324256 15329668 Cca10g01192 10 15324256 15329668 ECH