Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01190 ATGAGAAATCACCTTCTCTTCTTATTCGCTCTCATTGCACTCGCCCCCACTTTCTCTCTCCACTCTCAGCCTCAAGCTGCTCCCGCAGGGCCGTTGATTAAGCATCTGTCTTCGCTCATCAGATGGACAAGGTCTACCTCCAAGACGCCGCACTCAGATGGGAATGTTCTTCAATTTGAAAATGGTTACGTGGTTGAGACTGTTGTGGAAGGAAACGAGATTGGGGTTGTCCCTTACAGGATCCGTGTGTCTGAGGAGGATGGTGAACTCTTTGCTGTTGATGCAATTAATAGCAACATTGTTCGGATTACTCCGCCGCTGTCCCAATATAGTAGAGGAAGATTGGTGGCTGGGTCGTTTCAGGGCTACACAGGCCATGTGGATGGAAAACCAAGTGATGCTCGTTTCAATCATCCCAAAGGCATAACCATGGATGATAAGGGGAATGTTTATGTTGCTGATACTCAGAATCTGGCCATCAGAAAGATTGGAGATTCTGGTGTGACAACCATTGCTGGAGGAAAGTCAAGTGCTGCAGGCTACAGGGATGGGCCTAGTGAGGATGCTAAATTCTCAAATGATTTTGATGTGGTATATGTTCGGCCCACCTGTTCCTTGTTGGTCATTGATAGAGGAAATGCTGCTCTTCGACAAATCTCTCTTGACCAGGAAGACTGTGATTATCAGTCTAATTCAATTTCTAGTACATATATCCTTACAGTTGTTGGTGCTGTTATAGTAGGATATGCTACATGTATGCTTCAGCAGGGATTTGGATCCTCTTTCTTCTCAAAATCAcgaccatcagaAAGAGAGTATAAAGGACCAGCAAGCAATGAGAAGCATATGCCAATCCTGGAGAGCAGTAAAGAGGAACCAGGATGGCCATCTTTCGGACAGCTCATCATTGATCTTTCTAAGCTTTCCCTCGAAGCATTAGCCGGTGCTTTCACCCAATTCATTCCCTCACATTTCAGACCTGGCAACTCCAACAGAGGCCTAACACCGCTTAAAGATCGTCTCATGATGCCTGAAGATGAAGTGCAGCCTCCATTGGTCAATAGGCAAAATGCTCAAGGACATACTCCTCTTACCGAAACTCGGCTGCCACCGCAGGTCCATGCTCCTCTTAGTGAAAACCGGATGGCTTCACATGTCCACACTCCAAGCACTGCTGAGAAATACTCAGAAATGAAGCCTCCAAAGATAAAATCAAGCAGTTTCAAGGACCCCTCTTTGTCAAGCAAGCACCGATCTTCGAAACGACCCGAGTATGCTGAATTCTATGGATCTTCTGAGATTCCTCCATACTCCAAATCTAAGAGCCAGAAAGAAAGGCCAAGACACAGGCAGCGCGAAAAGAGTGGAGAAGTTTTTATGGGGGGAGTTGGAGCTGAGTCTAAACCTGTTGACACAAGGGGTGTTGATCATAGTAATCCAAAGTTTGACCATTACAGTATGAGGACTAAGTATGCATCTGAAGAGACCTTCCGGTTCAACTCTCAGTAA 1509 0.4553 MRNHLLFLFALIALAPTFSLHSQPQAAPAGPLIKHLSSLIRWTRSTSKTPHSDGNVLQFENGYVVETVVEGNEIGVVPYRIRVSEEDGELFAVDAINSNIVRITPPLSQYSRGRLVAGSFQGYTGHVDGKPSDARFNHPKGITMDDKGNVYVADTQNLAIRKIGDSGVTTIAGGKSSAAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLDQEDCDYQSNSISSTYILTVVGAVIVGYATCMLQQGFGSSFFSKSRPSEREYKGPASNEKHMPILESSKEEPGWPSFGQLIIDLSKLSLEALAGAFTQFIPSHFRPGNSNRGLTPLKDRLMMPEDEVQPPLVNRQNAQGHTPLTETRLPPQVHAPLSENRMASHVHTPSTAEKYSEMKPPKIKSSSFKDPSLSSKHRSSKRPEYAEFYGSSEIPPYSKSKSQKERPRHRQREKSGEVFMGGVGAESKPVDTRGVDHSNPKFDHYSMRTKYASEETFRFNSQ 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01190 502 MobiDBLite consensus disorder prediction 376 487 - -
Cca10g01190 502 MobiDBLite consensus disorder prediction 470 487 - -
Cca10g01190 502 PANTHER NHL DOMAIN-CONTAINING PROTEIN 14 499 - -
Cca10g01190 502 PANTHER - 14 499 - -
Cca10g01190 502 Pfam NHL repeat 136 162 IPR001258 GO:0005515
Cca10g01190 502 Gene3D - 40 221 IPR011042 -
Cca10g01190 502 SUPERFAMILY NHL repeat 60 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01190 Cca-Chr10 15303913 15308400 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01190 - - gmx:100797841 904.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01190 10 15303913 15308400 Cca10g01190 10 15303913 15308400 ECH