Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01180 ATGGCGAAGGAAACAAGTTCAAAATTGAACATCGCAATAATTCACCCAGATCTTGGCATAGGTGGAGCTGAGAGGTTAATTGTGGATGCTGCTGTTGAACTTGCATCACATGGCCATAAAGTTCATGTTTTTACTGCACATCATGACAAAAATAGATGCTTTGAGGAGACTGTTGCTGGTACCTTTCCGGTTACTGTGTATGGTTCCTTTCTTCCCCGGCATATATTCTACCGTCTTCATGCATTGTGTGCATACCTTCGGTGCCTATTTGTTGCTTTCTGTGTACTTTTCATGTGGCATTCATTTGATGTTATCCTGGCAGATCAAGTCTCTGTAGTTATTCCCATCTTGAAACTTAAAAGGTCGTCTAAGGTTGTATTCTACTGTCATTTTCCAGACTTGTTGCTGGCTCAACATTCAACTTTCATTAGGAGGATGTATAGAAAACCGATAGATTATGCGGAAGAAATAACAACTGGAATGGCTGATTTGATACTTGTTAACAGCAACTTCACTGCATCTACTTTTGCAAATACTTTTAAGCATCTAGACGCTAAAGGAATTCGACCAGCTGTTCTATATCCAGCAGTTAATGTGGATCAGTTCAACGAACCCAGTTCCCTGAAGCTGAATTTTCTTTCCATCAATCGCTTTGAAAGGAAAAAGAACATACAATTAGCAATTTCAGCTTTTGCCATGCTTCACTCAACTGAAGGAGTTCTGAAGCACAAGGATATTACTAATGCTTCTTTGACTATTGCAGGTGGCTTTGACAAACGGTTGAAGGAGAATGTGGAGTACTTAGAAGAGCTTAAAGATTTAGCTGAAAAGGAAGGAGTCTCTGATAAAATAAGATTTATCACATCTTGCCCTACAGCTGAAAGAAATGCACTTCTTTCAGAATGCCTGTGTGTCCTTTACACACCGAAGGATGAGCACTTTGGCATTGTTCCTTTGGAGGCAATGGCTGCTTATAAACCTGTTATTGCATGCAATAGTGGTGGTCCCGTGGAGTCCATTAAGAATGGTGTAACAGGTTTCCTTTGTGATCCTACACCACAAGAGTTTTCTTTAGCAATGGCTAAGCTCATAACTGATCTTCAAGGAGCAGAAAAAATGGGCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTACCAAATCATTTGGCCAGCATCTAAATAGGTATCTAGTTGATATTCATAGGGGAAAGGAGGACTAA 1224 0.4028 MAKETSSKLNIAIIHPDLGIGGAERLIVDAAVELASHGHKVHVFTAHHDKNRCFEETVAGTFPVTVYGSFLPRHIFYRLHALCAYLRCLFVAFCVLFMWHSFDVILADQVSVVIPILKLKRSSKVVFYCHFPDLLLAQHSTFIRRMYRKPIDYAEEITTGMADLILVNSNFTASTFANTFKHLDAKGIRPAVLYPAVNVDQFNEPSSLKLNFLSINRFERKKNIQLAISAFAMLHSTEGVLKHKDITNASLTIAGGFDKRLKENVEYLEELKDLAEKEGVSDKIRFITSCPTAERNALLSECLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVESIKNGVTGFLCDPTPQEFSLAMAKLITDLQGAEKMGREARRHVVESFSTKSFGQHLNRYLVDIHRGKED 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01180 407 Pfam Glycosyltransferase Family 4 20 200 IPR028098 -
Cca10g01180 407 Gene3D Glycogen Phosphorylase B; 205 385 - -
Cca10g01180 407 Coils Coil 258 278 - -
Cca10g01180 407 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 10 396 - -
Cca10g01180 407 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 4 404 IPR027054 GO:0004378|GO:0006486
Cca10g01180 407 Gene3D Glycogen Phosphorylase B; 9 204 - -
Cca10g01180 407 Pfam Glycosyl transferases group 1 211 379 IPR001296 GO:0016757
Cca10g01180 407 CDD GT4_ALG2-like 9 394 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01180 1 407 Glycosyltransferase AT1G78800 77.506 0.0 666
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01180 K03843 - gmx:100809168 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01180 10 15155376 15158958 Cca10g01180 10 15155376 15158958 ECH