Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01171 ATGATGCGCCAGGCAGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTAATTATTTTCTCGGATATCCTTACGCCCCTTCCTGCATTTGGAGTTGATTTTGACATAGAAGAAGTAAGGGGACCAGTTATACATTCACCCATTCGATCTGAGGAGGGATTAAAGACTTTGCATCCGATTGACCTAGATAGGCTTAAATTTGTTGGAGAATCACTTAAGATACTGCGCCAAGAGGTTGGTGGTAACGCTGCTGTTTTGGGTTTTGTGGGAGCACCTTGGACAATAGCAACATACATTGTGGAAGGGGGTACAACACGCACATATACAACCATTAAAAGCATGTGCCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACGCAGGCAATAGCTGATTACGTTGTTTTTCAAGTGGAGTCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTACCACCTGATATGTGGGAACGCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAATGTCCGGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGAAAGACACTGGAGTTGACGTTATAGGGCTAGACTGGACAGTAGATATGGCTGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCAGCCTGCTTATTCTCCCCCCTTTCTGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTGGGACATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAGGAGCTTGCAGTTTGACACATTTTTTCAAAACAATACTGCAAAAGACCCTAATCTAGTAGCATAA 1017 0.4425 MMRQAGRYMAVYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGVDFDIEEVRGPVIHSPIRSEEGLKTLHPIDLDRLKFVGESLKILRQEVGGNAAVLGFVGAPWTIATYIVEGGTTRTYTTIKSMCHTAPHVLRTLLSHLTQAIADYVVFQVESGAHCIQIFDSWGGQLPPDMWERWSKPYIKEIVNLVKKKCPEVPIVLYINGNGGLLERMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPACLFSPLSALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVARSLQFDTFFQNNTAKDPNLVA 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01171 338 TIGRFAM hemE: uroporphyrinogen decarboxylase 1 318 IPR006361 GO:0004853|GO:0006779
Cca10g01171 338 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 1 333 - -
Cca10g01171 338 Gene3D - 1 322 IPR038071 -
Cca10g01171 338 CDD URO-D 1 319 IPR006361 GO:0004853|GO:0006779
Cca10g01171 338 Pfam Uroporphyrinogen decarboxylase (URO-D) 1 319 IPR000257 GO:0004853|GO:0006779
Cca10g01171 338 ProSitePatterns Uroporphyrinogen decarboxylase signature 2. 117 133 IPR000257 GO:0004853|GO:0006779
Cca10g01171 338 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 1 333 - -
Cca10g01171 338 SUPERFAMILY UROD/MetE-like 1 320 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01171 Cca-Chr10 15051932 15055397 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01171 K01599 - gmx:100807032 661.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01171 10 15051932 15055397 Cca10g01171 10 15051932 15055397 ECH