Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01169 ATGGCTTCTTCTAGTTCCCTTTTCACCTTATTCTTATTCTCATTCTCGTTCTTCACCATCATAGCTCACGCTATTGTTCCTCAGAACGAGACCTTCAAATTTGTGAACTCGGGTGAACTTGGACCCTTCATTGTTGAGTATGGTGCTGATTACCGCATGATAAGCATCTTCAACTCACCTTTCCAAGTAGGTTTCTACAACACCACCCCAAATGCCTTCACTTTGGCTTTGCGTGTAGGACTCCAACGCTCGGAGCAGCTATTTCGTTGGGTTTGGGAGGCCAATAGAGGCACCCCAGTTGGAGAAAATGCCACTTTTTCACTTGGCACTGATGGCAACCTTGTCTTGGCTGATGCAGATGGTAGAATTGCATGGCAAACCAACACTTCCAACAAGGGTGTTGTGGCCTTCAGGTTGCTTCCAAATGGCAACATGGTCCTACTTGATGCACAAGGTAAGTTCGTTTGGCAGAGTTTTGACCATCCAACGGATACCCTTTTGGTTGGTCAGTATCTTAGAGCAAAAGGGCCTAACAAGTTGGTTAGTAGGCTTTCTGAAGAAAATCTAGATGGCCCTTATAGTTTGGTTTTGGAGCCTAAAGGGTTGGCTTTGTACTACAAGAGCAAGAACTCTCCTAGGCCAATTCTCTATTGGTTTTCATCTGATTGGTTCTCCATTCCACAAGGCTCGTTGGAAAATGTGACCCTCACATCTGACTCAGAGACTTTTGAAATTGGATTTGATTACCATGTGGCCAACTCTTCCATCTCTAGTGGGAATAGAATCATTGGCAGGCCAGTGAACAACAGCACCATAACATACCTTAGGCTTGGCATTGATGGCAACATTAGGATGCACACTTATTTTCTTGATGTGCGTGATGGTGTGTGGCAAGTGACCTACACTTTATTTGATAGAGACTCTGATGAGAGTGAGTGCCAATTGCCTGAGAGGTGTGGGAAATTTGGGTTGTGTGAGGATAACCAATGTGTGGCTTGTCCTTTGGAAAATGGACTATTTGGGTGGAGCAACAATTGCACTTCCAAGGCTGTGACATCATGCAAGGCTAGTGAGTTCCACTACTACAAAGTTGAAGGTGTTGACCATTACATGAGCAAATACACCACAGGGGATAGAGTGAGTGAGAGTAATTGTGGAAACAAATGTACCAAGGATTGCAAGTGTGTGGGGTACTTCTACCATAGAGAGAACTCAAGGTGTTGGATAGCTTATGATCTGCAAACACTTACTAGAGTGGCTAATTCCTCACATGTGGGGTATATTAAGGTGCCTAATTAG 1299 0.4434 MASSSSLFTLFLFSFSFFTIIAHAIVPQNETFKFVNSGELGPFIVEYGADYRMISIFNSPFQVGFYNTTPNAFTLALRVGLQRSEQLFRWVWEANRGTPVGENATFSLGTDGNLVLADADGRIAWQTNTSNKGVVAFRLLPNGNMVLLDAQGKFVWQSFDHPTDTLLVGQYLRAKGPNKLVSRLSEENLDGPYSLVLEPKGLALYYKSKNSPRPILYWFSSDWFSIPQGSLENVTLTSDSETFEIGFDYHVANSSISSGNRIIGRPVNNSTITYLRLGIDGNIRMHTYFLDVRDGVWQVTYTLFDRDSDESECQLPERCGKFGLCEDNQCVACPLENGLFGWSNNCTSKAVTSCKASEFHYYKVEGVDHYMSKYTTGDRVSESNCGNKCTKDCKCVGYFYHRENSRCWIAYDLQTLTRVANSSHVGYIKVPN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01169 432 Pfam D-mannose binding lectin 91 176 IPR001480 -
Cca10g01169 432 CDD PAN_AP_plant 353 431 - -
Cca10g01169 432 ProSiteProfiles Bulb-type lectin domain profile. 29 160 IPR001480 -
Cca10g01169 432 PANTHER - 11 432 - -
Cca10g01169 432 PANTHER EPIDERMIS-SPECIFIC SECRETED GLYCOPROTEIN EP1-LIKE 11 432 - -
Cca10g01169 432 Gene3D - 54 160 IPR036426 -
Cca10g01169 432 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 223 IPR036426 -
Cca10g01169 432 SMART blect_4 45 162 IPR001480 -
Cca10g01169 432 PIRSF SLG 1 432 IPR035446 -
Cca10g01169 432 ProSiteProfiles PAN/Apple domain profile. 354 432 IPR003609 -
Cca10g01169 432 CDD B_lectin 45 162 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01169 Cca-Chr10 15036883 15038816 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01169 - - gmx:100804561 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01169 10 15036883 15038816 Cca10g01169 10 15036883 15038816 ECH