Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01167 ATGGCGAACAGGAACATGGAAAAGATGGCATCTATTGATGCACAGCTTAGGCAATTGGCTCCTGCCAAAGTGAGTGAGGATGACAAATTGATTGAGTATGATGCTCTTCTTCTTGATCGGTTCCTTGATATTCTTCAGGATTTACATGGGGAGGATCTGAAGGAAACAGTTCAAGAAGTGTATGAGCTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAGCTTGGAAAAGTGATAACCAGTTTGAATGCTGGGGACTCTATTGTTGTTGCCAAGTCCTTTAGCCACATGCTTAACTTGGCCAACTTGGCTGAAGAGGTCCAGATTGCTCGGCGGCGAAGGAACAAGTTGAAGAAAGGGGATTTTGCCGATGAGAACAGTGCAACTACAGAATCAGACATTGAAGAAACTCTCAAGAGACTTGTGTTTGACTTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTGGTGCTTACTGCTCATCCTACTCAATCAATTCGTAGATCTTTGCTTCAAAAGCATGCAAGGATAAGGAATTGTTTATCTCATTTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGTCTCTACAAAGGGAGATTCAAGCTGCCTTCCGTACAGATGAAATCAGGAGGACCCCTCCAACACCACAAGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGAAGGGTGTTCCCAAATTTCTGCGCCGTGTTGATACAGCTTTGAAGAACATAGGAATTAATGAGCGTGTTCCTTATAATGCTCCACTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGCGATGGTAATCCAAGAGTTACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAACTTTCTATGTGGCGTTGCAATGATGAACTACGTGTTCGTGCAGAAGAACTTCATAGGTCTTCCAAGAAAGATGAAGTTGCAAAACACTACATAGAATTTTGGAAAAAGATTCCCTCAAATGAACCATATCGTGTGGTGCTGGGTGAAGTAAGGGATAGGCTCTATCAGACTCGTGAGCGTTCTCGCCATTTGCTAGCTAATGGGTACTCTGACATTCCAGAGGAAGCCGCTTTCACCTATGTTGAGGAGTTCCTGGAGCCTCTTGAGCTATGCTACAGATCACTGTGTGCTTGTGGTGATAGAGCAATTGCTGATGGAAGCCTTCTTGATTTCATGAGACAAGTCTCCACTTTTGGACTGTCAATAGTGAGGCTTGATATCAGGCAAGAGTCTGATCGTCACACTGATGTGATGGATGCCATAACCAAGCACTTGGAAATTGGCTCCTACCAGGAATGGTCTGAAGAGAAAAGACAGGAATGGTTGTTATCTGAGTTAAGTGGAAAAAGGCCTCTATTTGGACCTGACCTTCCCCAAACTGAAGAAATCAGAGATGTTTTGGACACATTTCATGTCATAGCAGAACTACCATCAGACAGCTTTGGAGCCTACATCATATCAATGGCAACTACACCATCTGATGTGCTAGCAGTTGAACTTCTCCAACGTGAATGCCACATCAAGAATCCATTAAGAGTTGTGCCATTGTTTGAAAAGCTCAATGATCTAGAGGCGGCACCGGCAGCTTTGGCGCGGTTGTTCTCGATAGACTGGTACAGAAATAGGATCAATGGGAAGCAAGAAGTGATGATTGGTTACTCAGACTCAGGAAAAGATGCTGGAAGATTCTCTGCAGCATGGCAGCTGTATAAGGCTCAAGAGGAACTTATAAAGGTTGCCAAGAAATTTGGTGTTAAGTTAACCATGTTCCATGGTCGTGGTGGAACTGTTGGAAGAGGAGGTGGACCTACTCATCTTGCTATTCTGTCTCAGCCTCCAGACACAATCCATGGATCGCTTCGTGTCACGGTCCAAGGAGAAGTTATTGAGCAATCATTTGGAGAACACCACTTGTGCTTTAGAACACTGCAACGTTTCACTGCTGCCACTCTAGAGCATGGCATGCATCCACCAATTTCTCCTAAACCAGAATGGCGTGCCTTGATGGATCAGATGGCTATCATTGCTACTGAGGAATACCGTTCGATTGTGTTCAAGGAACCGCGCTTTGTTGAATATTTCCGGCTGGCTACACCAGAGTTGGAGTATGGAAGGATGAATATTGGAAGTCGACCAGCAAAGAGAAGGCCTAGTGGAGGCATTGAAACACTGCGCGCAATTCCTTGGATCTTTGCATGGACGCAGACAAGGTTTCATCTTCCTGTGTGGCTAGGCTTTGGAGCAGCATTTAAAAAGATTATTGAGAAAGATGTTAGAAATCTTAATGTGCTGCAAGAGATGTACAATCAATGGCCTTTCTTTAGGGTCACACTTGATTTAGTGGAAATGGTGTTTGCCAAAGGAGACCCAGGAATCGCTTCTCTGAATGATAAGCTCCTTGTTTCAAAGGATCTATGGCCATTTGGGGATCAACTGAGGAGCAAATATGAAGAAACTAAGAAGCTCCTACTTCAGGTGGCTGCACACAAGGAAGTTCTCGAAGGGGACCCCTACTTGAAGCAAAGACTGAGACTTCGTGATTCCTACATTACTACCCTCAATGTTTTCCAAGCTTACACATTGAAACGTATCCGTGATCCCAACTACAATGTGAATGAGCGCCCCAGCATATCAAAGGAATCTGTGGAGAAGTCTGTTGTGTCGAGTAAATCAGCTGATGAACTTGTGACACTGAACCCAACAAGTGAATACGCCCCTGGTTTGGAAGACACCCTCATTCTCACCATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA 2916 0.441 MANRNMEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGKVITSLNAGDSIVVAKSFSHMLNLANLAEEVQIARRRRNKLKKGDFADENSATTESDIEETLKRLVFDLKKSPQEVFDALKNQTVDLVLTAHPTQSIRRSLLQKHARIRNCLSHLYAKDITPDDKQELDESLQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRAEELHRSSKKDEVAKHYIEFWKKIPSNEPYRVVLGEVRDRLYQTRERSRHLLANGYSDIPEEAAFTYVEEFLEPLELCYRSLCACGDRAIADGSLLDFMRQVSTFGLSIVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPSDSFGAYIISMATTPSDVLAVELLQRECHIKNPLRVVPLFEKLNDLEAAPAALARLFSIDWYRNRINGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEHHLCFRTLQRFTAATLEHGMHPPISPKPEWRALMDQMAIIATEEYRSIVFKEPRFVEYFRLATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKKIIEKDVRNLNVLQEMYNQWPFFRVTLDLVEMVFAKGDPGIASLNDKLLVSKDLWPFGDQLRSKYEETKKLLLQVAAHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYNVNERPSISKESVEKSVVSSKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01167 971 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 971 - -
Cca10g01167 971 Pfam Phosphoenolpyruvate carboxylase 35 971 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 ProSitePatterns Phosphoenolpyruvate carboxylase active site 1. 168 179 IPR018129 -
Cca10g01167 971 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE 1 971 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 Coils Coil 104 124 - -
Cca10g01167 971 ProSitePatterns Phosphoenolpyruvate carboxylase active site 2. 593 605 IPR033129 -
Cca10g01167 971 Gene3D Phosphoenolpyruvate/pyruvate domain 308 445 - -
Cca10g01167 971 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 33 971 IPR015813 GO:0003824
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 167 180 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 220 236 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 280 295 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 442 462 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 591 611 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 633 662 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 PRINTS Phosphoenolpyruvate carboxylase signature 765 791 IPR021135 GO:0006099|GO:0008964|GO:0015977
Cca10g01167 971 Hamap Phosphoenolpyruvate carboxylase [ppc]. 23 971 IPR022805 GO:0006099|GO:0008964|GO:0015977
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01167 Cca-Chr10 14973120 14979952 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01167 K01595 - gmx:100805069 1814.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01167 10 14973120 14979952 Cca10g01167 10 14973120 14979952 ECH