Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01148 ATGTTTCCCTCTCTCACTTCCCACCGGTTCCTCTTCCTCATCCTGTGGATCGTGATCCTCTGCGCTCATCTCCACGTCCACGTCCACGCCCGCACCTTCACCGGCGATCCACTCTCCGACGGGGGCAAGTGGCAGAGCCTGCTCCGCCTTCCCACGTCGCTGACTCTGAGGGGCGAGTCCTCCTGCGAGCAGACCTACGGATTCCTACCGTGCACCACCACCGTGCTCGGGAACTTGTTCCTCATCGTAGTCTATGGCTTCCTCATGTTCAAGGCCGCCACGTTCCTCTCCAACGGCAGCGAGCTTCTGCTCGAGATCTTGGGCCCCGGCATTGTTGGCGGCCTCTTCCTCCCCATCCTCGGCGCGCTCCCCGACGCCATGCTCATTCTCGTGTCTGGGCTTTCAGGTAGTAAAGAAACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCAACAGTGTTGCTTCTGACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATCGAGGATTCAATTGCAATAGATTCACGAGACACTAGGGGATTTAGTTTAACTGGTTCTGGTGTTAGTACTGATATTTGGACTAGTTATGCTGCAAGGATTATGGTTTTATCTATCCTTCCATTTGTGATTGTTCAATTTCCACAAATTCTCAATTCAACCTCAGGAAGGCACTTGGCTGTTTTGATTGCTCTCATTGTGTCTCTTGCTTTATTGGTTGCTTATTGTCTTTACCAGATTTTCCAGCCCTGGATACAAAGGAGGAAACTTGAATATATTAAACACAAGCATGTTATTTTAGGACTTTTGACACATTTGAAGAAGCGTGCATTGGGAAGGCTGCTGAAAGAAAATGGTGAACCTGACAGAGATGTCATTGAAAAATTGTTTGCAACTATTGATGAAAATCAAGATGGAAATCTTACTCATAGTGAATTGAGAGCACTGCTTATTGGAATTCAGTTTGAGGAGATTGACCTGGATCATGATGACGCTGTAAAGAGAATCATGTATGATTTTGATACTTCTGGTAATCAACTTGTTGAGCAACAAGAATTTGTTAATGGTGTCTCTAGATGGCTTCAAAGGGCCCAGCATGCTCGGGTTGCATCTGGTGATGCTGGTCCACACACAATGAAGTTTTTAAGTGATTTTCACAGGGAAACAAAGAGGGAACATGATCTTCTGGATGTGGGGGATCAGAGTAATGAAGAAGCTGAGGGCGTTGAGGATGCTAAATGGACTTCCATCAAAGCAGTACTGTTTCTGATACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTGGTTGATGCAGTCGATAACTTTTCTGATGCTACAAGTATTCCTGCATTCTTCATTTCCTTCATTGCGCTGCCCTTAGCAACCAATTCAAGTGAAGCAGTGTCAGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACTGCTTCATTAACTTTTTCTGAGCTATATGGCGCAGTGACAATGAACAATGTGCTGTGCCTATCAGTGTTCTTGGCCCTGGTTTATGTTCGGGGATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATTCTGGTGGTTTGCATAGCCGTGGGCGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCCATACTGGCTATCCTACTTTATCCCTTCTCCCTCGCATTGGTCTATGTTCTTGATTATGTATTTGGTTGGTCATAG 1740 0.4615 MFPSLTSHRFLFLILWIVILCAHLHVHVHARTFTGDPLSDGGKWQSLLRLPTSLTLRGESSCEQTYGFLPCTTTVLGNLFLIVVYGFLMFKAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEDSIAIDSRDTRGFSLTGSGVSTDIWTSYAARIMVLSILPFVIVQFPQILNSTSGRHLAVLIALIVSLALLVAYCLYQIFQPWIQRRKLEYIKHKHVILGLLTHLKKRALGRLLKENGEPDRDVIEKLFATIDENQDGNLTHSELRALLIGIQFEEIDLDHDDAVKRIMYDFDTSGNQLVEQQEFVNGVSRWLQRAQHARVASGDAGPHTMKFLSDFHRETKREHDLLDVGDQSNEEAEGVEDAKWTSIKAVLFLILGTIIAAAFADPLVDAVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSELYGAVTMNNVLCLSVFLALVYVRGLTWDFSSEVLVILVVCIAVGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01148 579 CDD EFh 300 365 IPR002048 GO:0005509
Cca10g01148 579 SMART efh_1 299 327 IPR002048 GO:0005509
Cca10g01148 579 SMART efh_1 339 367 IPR002048 GO:0005509
Cca10g01148 579 Gene3D - 107 278 IPR044880 -
Cca10g01148 579 Pfam Sodium/calcium exchanger protein 426 570 IPR004837 GO:0016021|GO:0055085
Cca10g01148 579 Pfam Sodium/calcium exchanger protein 80 256 IPR004837 GO:0016021|GO:0055085
Cca10g01148 579 ProSitePatterns EF-hand calcium-binding domain. 308 320 IPR018247 -
Cca10g01148 579 Pfam EF-hand domain pair 298 362 IPR002048 GO:0005509
Cca10g01148 579 Gene3D - 279 389 - -
Cca10g01148 579 ProSiteProfiles EF-hand calcium-binding domain profile. 295 330 IPR002048 GO:0005509
Cca10g01148 579 PANTHER SODIUM/CALCIUM EXCHANGER NCL 18 576 - -
Cca10g01148 579 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 18 576 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cca10g01148 579 ProSitePatterns EF-hand calcium-binding domain. 348 360 IPR018247 -
Cca10g01148 579 SUPERFAMILY EF-hand 294 369 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01148 Cca-Chr10 14693284 14698824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01148 59 579 EF-hand Containing Proteins AT1G53210 69.905 0.0 737
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01148 - - gmx:100809896 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01148 10 14693284 14698824 Cca10g01148 10 14693284 14698824 ECH