Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01147 ATGAGGAACATTAATCCCAAAACACCATGCTTCATCTTTCTTCTTTTATTAGCAACGGTTCAAGGTCGCTATGTGCGAGACAAAGCTACCAAATTAGTTTCGGATGGTGTTCATGATGTTGAACAACAACACAACAAAACTTCATACTTAGTTCTCAAAGGAATTGATGTTGGTGATGGTGATGATGAATCCTTGGAGGTGCAGTGCAAGCAAATGTATGGCTTCTTGCCATGCACAAATAATATTTTTGGGCATCTCTTTCTTATTTTGGTGTATGAGTATTTGCTTTTCCATGGAGAATCATATTTGGCTAAGGGAGGTGAACAAATGTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTTGGTGCCCTTCCAGAGCCCTTAAttcttcttgTTTCTGGAGTGGTTGTGAGCAATAGGGAGATAGCACAAGAATATGCCTTCACTGGAGTTGGCTTATTGGCTGGATCATCCATCTTGCTTCTCACACTTGTTTGGCCAACCTGTGTCATTGCTGCCACCCAAGAATTTCCTCATCATTCTCACCCTTCTAATTCACCACATAATACTCTTCAAGCCTTATTCACTTGTTACGGCATTACTACGGATTTGGAAACGTGTTACACTGCAAGAATCATGGTTTGCTCAGTCATACCTCTTGTGATCATGCAAATTCCATATTTATTCCAATTCTCTTCTGGGCCAAGAAGTGTCACCTTAGTAATTGCCCTTGTTATTACCTCCATTTTTCTCTTCGTCTACTTCGTTTACCAGATTTTTGAACCATGGGTACAGAAAAGAAGACTGGAATATGTGAAACATGATCATTTAATATTGAAAATATTGCAACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGAACTCCAAATGTGAGCGCCATAAGGCGATTGTATAGGGAATTAGATCAAGATGGGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTCTTGCTTAAAAACAAAGTTACTGAAACAAATATCGATGAGGAGAAGGAAATAAAAAAGGTGCTACAGATTTTTGACCTGGATGGTGACCAAAAAATAAATAAGGAGGAATTTGTCAGTGGCTTCACAAAATGGCTTGATCAAACTAAGCATGCTTTTGATAAACAGTATTTTTCAAGGAAATCATTGAAACACATATATCAGGTTTTTGGACCTTGGCTTGAAAACAAAAGAAGAGAACGTGAAGGAAAGAAACAGCTTATATCTGAAATCTTAAGGCATGTTCAGAGTGATATGGTTGGTAGCCTTCTCACAGAAGATGGAAAACCTGATGAACATTCTATCAGAGAGTTGTTTGAGAAAATTGATCGCAATAGAGATAACTTCATTTCTCACTCTGAGTTGAGAGAGCTAATCATGAACATCAAGTTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCTTTAGTCATTGAAGAACTTGACACTGACAAAGACCACATAATCAATGAGGAGGAGTTTGTTGCTGGGTTTGAGAAATGGATTAGCTCAACTTCAGATCATGCTCCTGTGACAGATTCTGAGTCTCAAGAAGATATGTATGAGACCTGGGAAGAGGCTGACATGGTGGTGGGAGAGAAGCAAAGCAAAGCAATTGTTGATAAATCAATATGTGCATGGTTTAAGGCCATAATATATGTGGTGCTGGGAATTGCTATGCTATCCATTTTGGCAGAGCCCCTGATAGAGAGTGTCCACAATTTCTCTACCAGTGCAGGACTTCATCCATTTTTCATGTCATTTATTCTAGTTCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGCAATCAAAGAAGCAAGCCATAAGAAGCCAAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTGGGCTTCTTTGCAATCTCAATTCTGATCTATGTGCGACAAGTCACTTGGCAATTCTCAGCTGAAATGCTGGTCGTTGCCATTGTTTGTTCAATTTCGGGCTTTGCTGCAAGTTTTGTCACCATTATCCCTTTGTGGTCTTCCTTCTTTGCAATCCTCTTGTACCCATTGTCCTTGGTTCTGGTTTTATGTTCTCAATTATAA 2139 0.3941 MRNINPKTPCFIFLLLLATVQGRYVRDKATKLVSDGVHDVEQQHNKTSYLVLKGIDVGDGDDESLEVQCKQMYGFLPCTNNIFGHLFLILVYEYLLFHGESYLAKGGEQMFKILGPGIFGASAFHILGALPEPLILLVSGVVVSNREIAQEYAFTGVGLLAGSSILLLTLVWPTCVIAATQEFPHHSHPSNSPHNTLQALFTCYGITTDLETCYTARIMVCSVIPLVIMQIPYLFQFSSGPRSVTLVIALVITSIFLFVYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGTPNVSAIRRLYRELDQDGSSGISASEVKDLLLKNKVTETNIDEEKEIKKVLQIFDLDGDQKINKEEFVSGFTKWLDQTKHAFDKQYFSRKSLKHIYQVFGPWLENKRREREGKKQLISEILRHVQSDMVGSLLTEDGKPDEHSIRELFEKIDRNRDNFISHSELRELIMNIKFVKASMEVEEAVALVIEELDTDKDHIINEEEFVAGFEKWISSTSDHAPVTDSESQEDMYETWEEADMVVGEKQSKAIVDKSICAWFKAIIYVVLGIAMLSILAEPLIESVHNFSTSAGLHPFFMSFILVPLATNAREATSAIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISILIYVRQVTWQFSAEMLVVAIVCSISGFAASFVTIIPLWSSFFAILLYPLSLVLVLCSQL 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01147 712 Pfam EF-hand domain pair 448 511 IPR002048 GO:0005509
Cca10g01147 712 Pfam EF-hand domain pair 310 373 IPR002048 GO:0005509
Cca10g01147 712 Gene3D - 375 515 - -
Cca10g01147 712 ProSitePatterns EF-hand calcium-binding domain. 496 508 IPR018247 -
Cca10g01147 712 ProSiteProfiles EF-hand calcium-binding domain profile. 483 518 IPR002048 GO:0005509
Cca10g01147 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 559 708 - -
Cca10g01147 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 8 391 - -
Cca10g01147 712 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 399 527 - -
Cca10g01147 712 SUPERFAMILY EF-hand 309 518 IPR011992 -
Cca10g01147 712 CDD EFh 448 512 IPR002048 GO:0005509
Cca10g01147 712 CDD EFh 311 376 IPR002048 GO:0005509
Cca10g01147 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 399 527 - -
Cca10g01147 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 559 708 - -
Cca10g01147 712 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 8 391 - -
Cca10g01147 712 ProSitePatterns EF-hand calcium-binding domain. 359 371 IPR018247 -
Cca10g01147 712 Pfam Sodium/calcium exchanger protein 565 708 IPR004837 GO:0016021|GO:0055085
Cca10g01147 712 ProSiteProfiles EF-hand calcium-binding domain profile. 306 341 IPR002048 GO:0005509
Cca10g01147 712 ProSitePatterns EF-hand calcium-binding domain. 456 468 IPR018247 -
Cca10g01147 712 Gene3D - 266 374 - -
Cca10g01147 712 SMART efh_1 447 475 IPR002048 GO:0005509
Cca10g01147 712 SMART efh_1 350 378 IPR002048 GO:0005509
Cca10g01147 712 SMART efh_1 310 338 IPR002048 GO:0005509
Cca10g01147 712 SMART efh_1 487 515 IPR002048 GO:0005509
Cca10g01147 712 ProSiteProfiles EF-hand calcium-binding domain profile. 346 381 IPR002048 GO:0005509
Cca10g01147 712 ProSiteProfiles EF-hand calcium-binding domain profile. 443 478 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01147 Cca-Chr10 14674171 14681424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01147 399 707 EF-hand Containing Proteins AT1G53210 40.597 1.25e-66 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01147 - - gmx:100798009 1135.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01147 10 14674171 14681424 Cca10g01147 10 14674171 14681424 ECH