Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01146 ATGTATATTAAGAGCATGTTGTTTGAGGAAATTGATGTCAACCACGATAATCACGTTTCAAGATCTGAATTGGAAAAAGTAGTCAAGGGCATCCAGTTTGGCAAGGTTGTAGATGCTGAGGAGGCGGTTTCAAAACTTGTTCAAGATCTTGATCTAAACCGAGACGATGAAATTAGTGAGACCGAATTTATTGAAGGTTTTGCAAAATGGATGAACTCAAATTCCAGCGAAGCTGCCAAGTCAAAATCTTCATCTCAGGAAATTCATCAAACCTGGGAAGATGTTGAAAGGGTAATGGAAGAAAATCAAACCAAAGGAGCATCTGCATGGTTGACGGCCATAGCATATGTGGTGCTGGGAATTACTATACTGTCTCTACTTGCAGAGCCCTTAATAGCAAGTGTCCGAAAATTCTCTGAAGCTGCAGGAATTTCATCATTTTTCATCTCATTCATTTTAGTCCCCTTCGCCACAAATTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAGAAGAGCAGCAATACTTCTCAGACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTTGTGGTGATCTCTATTCTGATATACATGCGTGAGATCACTTGGGAATTCTCAGCTGATGTGCTAATTGTGGCAATAGTTTGTGCTGTAATGGGCCTCACTGCTTGCTTTCGGCCCACTTTTCCTCTTTGGACATCCTTCCCTGCATACCTCATTGCTTCTTCTATTGTAGTCGATTTTACGAGAGGTGATGATGGCACGGGCACAGTAGGAGTTATTACGGACAACAACTCTCGCAACGGTAAAGAGGAGATAGCAGTGGCTATTAAGATGGCATTGCATGATTTCTTTCATTACAGCAATCAAAGTTTTGCTTATGCTGTACAGATAAGGAACTCACATGGCTCAAGCTGCCCTTGCAGCTAG 954 0.4151 MYIKSMLFEEIDVNHDNHVSRSELEKVVKGIQFGKVVDAEEAVSKLVQDLDLNRDDEISETEFIEGFAKWMNSNSSEAAKSKSSSQEIHQTWEDVERVMEENQTKGASAWLTAIAYVVLGITILSLLAEPLIASVRKFSEAAGISSFFISFILVPFATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMREITWEFSADVLIVAIVCAVMGLTACFRPTFPLWTSFPAYLIASSIVVDFTRGDDGTGTVGVITDNNSRNGKEEIAVAIKMALHDFFHYSNQSFAYAVQIRNSHGSSCPCS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01146 317 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 112 249 - -
Cca10g01146 317 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 88 - -
Cca10g01146 317 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Cca10g01146 317 ProSiteProfiles EF-hand calcium-binding domain profile. 7 34 IPR002048 GO:0005509
Cca10g01146 317 Gene3D - 3 113 - -
Cca10g01146 317 SUPERFAMILY EF-hand 7 73 IPR011992 -
Cca10g01146 317 Pfam Sodium/calcium exchanger protein 114 237 IPR004837 GO:0016021|GO:0055085
Cca10g01146 317 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 112 249 - -
Cca10g01146 317 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 7 88 - -
Cca10g01146 317 Pfam EF-hand domain pair 7 66 IPR002048 GO:0005509
Cca10g01146 317 CDD EFh 8 68 IPR002048 GO:0005509
Cca10g01146 317 ProSitePatterns EF-hand calcium-binding domain. 12 24 IPR018247 -
Cca10g01146 317 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01146 Cca-Chr10 14651502 14656466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01146 7 248 EF-hand Containing Proteins AT1G53210 39.924 1.21e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01146 - - gmx:100799062 426.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01146 10 14651502 14656466 Cca10g01146 10 14651502 14656466 ECH