Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01140 ATGAAGCTCTCTTCCAAGTCCATTCTCAGCCCTAGCCGCAGCAGAGACCCTCCTCAGATTTCCCTCTCTTCTTCCCTCAGCAGGAGGCTCAAGAGCAATGGAAGCATCAAGGGTGGCCAAGCCTCTCCCATGTTCCCTACCGGTGGCAAGAGAAGAGGCTGTGGCTTTGAGAACCCTGAGCCTTCTTCCCCCAAAGTCACATGCATTGGCCAAGTAAGGGTGAAAACCAAGAAGCAAGGGAAGAAGATGAGGGCAAGGTCAAAAAGGAGAGGAGAGGCTAGCTTTAGAAAGGTTGAACAAGTTGGTCCAAATGGAAATGGTAATCTTAATGCAAATCCAGATCTCACTAGACAAAACAGCCAAGGGGTGAACTTTCACCACCAAAACTGTTTGAAGCATAGGAACCAAAGATGGGTGCACCTTCCCTTGACTATATGTGAGGCTTTGAGGGAGTTCAGCTGCTTTTTTCCATGCAGGTCTTCTTGCATGTCAAGTGAGAAGGAAAAGGAGAAGGGTGGTAGTGGAGGACATGATGGTGGTGATGGGAGAGAGGGTTCTTGTGGGGCTGCATTTGGAAGGTGGCTGGTGGCTTTGCAAgatggggatggcaaggggagggggattgagctggtgatggaagatgaggtggAGGGAGGAGAGACAGGTGAGAGGAGCCATAGCCAGAGGAGGCATGTGTTTGAGGACATTGATGTTGATTTGGTAGTGggagaggaggaagagaagaagcacgaggaggtggtgggagaggaagaggagaaagggagAGTTAGCATATGTATACCTCCAAAGAATGCTCTTTTGTTGATGAGGTGCAGATCTGATCCTGTCAAAATGGCAGCTTTGGCTAACCGGTTTTGGGAATCACCTGTTCACAAAGACAAATGTCaagaagaagaagaaaaagaagaagagcatgatgaagaggaccaacaacaacaagaaggagaagatgaccaagagcaacacatcaaaatggaacaagaacaagaagaacaacaccaacaagtagtagtagaagaagaacaacaagTTGAAAGTGAAACCAAAGAAGATAACATTTGTGAAAGAGAAACAGTTGTGGCGAGTGAAGAAGAGGAGCAAGAAGACGGGAAAGAAAGGTATGAAATTGAAAGCAGAGAGAACCTAGAAAGCAAAGAGTTTTCTCAAGAGGAAGAAAAGGGTGATGAAGAAAAAGAAGCAAATGTGGATGCCATTGACGAAGGTGAAACCTTAACACTCCCCGAAGCTCATTCAGATCCAGAGAAGCATAAAACCGAAGCAGAAGAGGTTAATCTCCAAGAGGGTAAGGAAGAAGAAAGAGAAAACGACGAAAGCTCGGAACTTTCATCCTCCCCAGAAATCTTCACAGCTTCAGAACCAGAAAACGACGTAGCAGAACCCGAAACGGAAGCAGTAACGGCGGAAACTTCAGAAGGGTCAGCAGAGGAAGAAcaaactcagaacccagacccgacccgagacccggatccggaGTCGAAGGAGCGAGAAAACGGGTCAAAACTTGAAGAGAGAAGAAAAGCTTTGCCGGAGTGCTTGTTGCTGATGATGTGCGAGCCGAAGCTGTCCATGGAGGTGTCAAAGGAAACGTGGAGGGTCGCGGGAGAGACACTTAACAAGCCGAAGGCGAAACCGAAACCCTCGCCGCCGATGATGCAGCCGCCGAGGTCGTCGTGCTCGTTCCcggcggcgggcggcggcggcggAGTGTCGATGGCGACGATGATCGAGCAGAAGCTGATGGGGTCGAAATCGGGTAATGGGTACGAGCCGTTTGTGCTGACGCGCTGCAAGTCGGAGCCGATGCGGTCATCGGCTAAGCTCGCGCCGGAGGCTTGTTTCTGGAACAACAGGAAGCTCGAGCCGCACCCTCCGCCGGCTCAGCTCGGAGTCGGCGCGCCGGCTGGTGTTGGtttttga 1959 0.4176 MKLSSKSILSPSRSRDPPQISLSSSLSRRLKSNGSIKGGQASPMFPTGGKRRGCGFENPEPSSPKVTCIGQVRVKTKKQGKKMRARSKRRGEASFRKVEQVGPNGNGNLNANPDLTRQNSQGVNFHHQNCLKHRNQRWVHLPLTICEALREFSCFFPCRSSCMSSEKEKEKGGSGGHDGGDGREGSCGAAFGRWLVALQDGDGKGRGIELVMEDEVEGGETGERSHSQRRHVFEDIDVDLVVGEEEEKKHEEVVGEEEEKGRVSICIPPKNALLLMRCRSDPVKMAALANRFWESPVHKDKCQEEEEKEEEHDEEDQQQQEGEDDQEQHIKMEQEQEEQHQQVVVEEEQQVESETKEDNICERETVVASEEEEQEDGKERYEIESRENLESKEFSQEEEKGDEEKEANVDAIDEGETLTLPEAHSDPEKHKTEAEEVNLQEGKEEERENDESSELSSSPEIFTASEPENDVAEPETEAVTAETSEGSAEEEQTQNPDPTRDPDPESKERENGSKLEERRKALPECLLLMMCEPKLSMEVSKETWRVAGETLNKPKAKPKPSPPMMQPPRSSCSFPAAGGGGGVSMATMIEQKLMGSKSGNGYEPFVLTRCKSEPMRSSAKLAPEACFWNNRKLEPHPPPAQLGVGAPAGVGF 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01140 652 MobiDBLite consensus disorder prediction 1 40 - -
Cca10g01140 652 Coils Coil 330 357 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 323 367 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 307 322 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 417 454 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 298 518 - -
Cca10g01140 652 PANTHER CHLOROPLAST PROTEIN HCF243 1 652 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 1 66 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 494 518 - -
Cca10g01140 652 PANTHER CHLOROPLAST PROTEIN HCF243-RELATED 1 652 - -
Cca10g01140 652 MobiDBLite consensus disorder prediction 379 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01140 Cca-Chr10 14548860 14551562 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01140 - - gmx:100801731 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01140 10 14548860 14551562 Cca10g01140 10 14548860 14551562 ECH