Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01131 ATGGTGTTCTCTTCCAACCCCTTATCCCTCAGCGTCCCGGAACCCGCCTTCGAGTCGTGGCTCCGCGACACCGGCTACCTGGAAGTCCTCGACCACCGCACCTCCTCGGCCGCCGCCGTCTCCCCCGCCCCCTCGTCCTCCGGCTCCGGGCTCTTGTCCCGCCTCCTCACCTTCCTCTCCCTCTTCACTCTCAACCCCTTCGCCAAGCTCACCGCCGATGACTTCGCCGGCGACACTCCCTCCTGGtcccgctccttcttcgccttctcccactcctactccttcccttcctctccctcCCAAGCTCGCCTCCGACTCCAAGAAAACGTCAAGCGCTACGCCCGCAACTACGCCTATCTCTTCATCCTTTTCTTCGCATGCACTCTGTACAAGATGCCGGTTGCTCTTGTTGGGTTGATATTGTGTCTGGCATTGTGGGATTTCTTCAAGTTTTGTAGCCATAGATGGGGATTGGAGCAGTATCCCTTAACCCGCCAGTGCTTGGTTCGCGTCGCCCAATGTGCGACTGCAGTTATTCTAATCTTTTCCAATGTTCAAATGGCTCTCTTTTGTGCCATATGCGTCAGCTATGCAGGTGTGATACTTCATGCTGCTTTTCGCAAGTTGACCCCTGTAAAGCAGCCTTCAGTGGGAAGAGGACAAGTTTGTTACAGAAGATTGGGCAATGTAAAAAGCATGGCAATGGCATGCAACATGAGAGCGAGAAGAAGAGTGTACGAAGGAATGATCCAAAGCCCTTTCCAACGGTTCGTGCACTCGTCTCCACCCGAGCTGATCCAAAACCTCCTCAAGTTCCGAAGAGACAAGCCCACCCAACAACTGGAGCAAGCCCTCGATCAATGcgacctccacctcacccacgacctcgtcctcgacGCCCTCCGCCGCCACCGCTCCGATTGGCGACCGGCCCACGTCTTCTTCAACTGGGCCTCCAAAGCCCCCACCTACAGGCCCAACTCCGACGTCTGCAACCAAATCCTCGACATCCTCGGCAAAACAAAGCGCTTTCACGAACTCCACCAAGTGCTCGACCAAATGTCCAAGACACACGGACTCATCAACGAAGCCACATTCTCCACCCTGCTTCGCAGGTTTATCGCTGCCCACAGAGTCCACGAAGCAGTTCAGTTATTCCACAGGAGGAGCGACTTCGGCTTGGACCCAGGTTCGGAGCCTTTCCAAACCCTCTTGATGTGGCTGTGCAGGTACAAGCACGTCGAAGACGCCGAAGCCTTGTTTCACAGCGATCCAGCGCTTCGTCACGACATTAAGACATGGAACCTCATTCTCAACGGTTGGTGCGTGCTGGGGAACGTGCACGAGGCCAAGAGGGTGTGGAGAGACATAGTGGCTTCTTCATGCAACCCTGATGTGTTCTCGTATGGAACCTTCGTCAATGCGTTGACCAAGAAAGGGAAACTCGGAACCGCGCTGAGGTTGTTCCGTGGAATGAGGGAGAAGGGTGGTTGCAAACCTGATGTTGTGATATGTAATTGCCTCATTGACGCTCTTTGTTTCAAGAAGAGGGTTCCTGAGGCGTTGGAGATTTTCAGGGAGATGAAGAGTGAGGGGGGTTGTGAACCCGATGTGGCTACTTACAATTCGCTTGTTAAGTGCATGTGCAAGATTCggaggatggagaaggtgtatgagctggtggatgagatggagaggaggaAAGGTGGGTGCTTGCCCAATGCTGTTACTTATTGTTACTTGCTGAGGAGCTTGAAGGATCCCGGGGAAGTTCGCGGGGTTTTGGAGAGGATGGAGAGAAATGGGTGTGGCATGAATGATGATGTTTATAACTTGTTGTTGAGGTTGTATGTGAAATGGGATGATGGGGATGGAGTGAGGAGAACTTGGGAAGAGATGGAGAGGAATGGATGGGGGCCGGATAGGCGATCGTATACCATCATGGTTCATGGCCACTTTGAGAGAGGCAGGGTGAAGGATGCTGTGCGTTATTTTGAGGAGATGGTTTCCAAGGGAATGGTTCCAGAGCCAAGGACGGAGAAGCTAGTGAGTTCCTTGAAGATTCGGGTGAAGGGGAGGACAGAACAACAGGAAGGTATTGATGAGGGGATTGCTAGTGTTTGA 2124 0.4976 MVFSSNPLSLSVPEPAFESWLRDTGYLEVLDHRTSSAAAVSPAPSSSGSGLLSRLLTFLSLFTLNPFAKLTADDFAGDTPSWSRSFFAFSHSYSFPSSPSQARLRLQENVKRYARNYAYLFILFFACTLYKMPVALVGLILCLALWDFFKFCSHRWGLEQYPLTRQCLVRVAQCATAVILIFSNVQMALFCAICVSYAGVILHAAFRKLTPVKQPSVGRGQVCYRRLGNVKSMAMACNMRARRRVYEGMIQSPFQRFVHSSPPELIQNLLKFRRDKPTQQLEQALDQCDLHLTHDLVLDALRRHRSDWRPAHVFFNWASKAPTYRPNSDVCNQILDILGKTKRFHELHQVLDQMSKTHGLINEATFSTLLRRFIAAHRVHEAVQLFHRRSDFGLDPGSEPFQTLLMWLCRYKHVEDAEALFHSDPALRHDIKTWNLILNGWCVLGNVHEAKRVWRDIVASSCNPDVFSYGTFVNALTKKGKLGTALRLFRGMREKGGCKPDVVICNCLIDALCFKKRVPEALEIFREMKSEGGCEPDVATYNSLVKCMCKIRRMEKVYELVDEMERRKGGCLPNAVTYCYLLRSLKDPGEVRGVLERMERNGCGMNDDVYNLLLRLYVKWDDGDGVRRTWEEMERNGWGPDRRSYTIMVHGHFERGRVKDAVRYFEEMVSKGMVPEPRTEKLVSSLKIRVKGRTEQQEGIDEGIASV 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01131 707 Gene3D Tetratricopeptide repeat domain 584 690 IPR011990 GO:0005515
Cca10g01131 707 Gene3D Tetratricopeptide repeat domain 425 493 IPR011990 GO:0005515
Cca10g01131 707 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 235 706 - -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 537 567 IPR002885 -
Cca10g01131 707 Gene3D Tetratricopeptide repeat domain 264 424 IPR011990 GO:0005515
Cca10g01131 707 Gene3D Tetratricopeptide repeat domain 494 568 IPR011990 GO:0005515
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 501 535 IPR002885 -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 641 675 IPR002885 -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 606 640 IPR002885 -
Cca10g01131 707 Pfam PRA1 family protein 85 208 IPR004895 -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 430 464 IPR002885 -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
Cca10g01131 707 Pfam Pentatricopeptide repeat domain 560 619 IPR002885 -
Cca10g01131 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 540 574 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 467 502 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 609 641 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 644 675 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 503 538 IPR002885 -
Cca10g01131 707 TIGRFAM PPR: pentatricopeptide repeat domain 433 466 IPR002885 -
Cca10g01131 707 Pfam PPR repeat family 430 477 IPR002885 -
Cca10g01131 707 Pfam PPR repeat family 500 550 IPR002885 -
Cca10g01131 707 Pfam PPR repeat 640 669 IPR002885 -
Cca10g01131 707 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 235 706 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01131 325 706 Glycosyltransferase AT1G05670 25.700 3.17e-36 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01131 - - gmx:100804908 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01131 10 14394422 14399448 Cca10g01131 10 14394422 14399448 ECH