Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01116 ATGGTGCTGCTCAGATGTTTCTCAGTGACACTTTTGCAGTGGTGTTTCTTGGCTTGCTTACTTTGCTTGTCTCTGGGTCTTGGCAATCAAGCCCCATCTTGTGACCCTCATGATTTATCTGCCCTGAAGGAGTTTGCAGGCAATCTTACAAGTGGCTCTATCACCACAGCATGGTCCAATGACACTGTCTGCTGCAACTGGCTTGGAGTTGTTTGTGATAATGTGACTGGTGGGGGTGGAACAGTTGCTAGTAGAGTGACCAAGTTGATCCTGCCTCAAATGGGTCTCAATGGGAAAATTTCACCCTCTTTGGGACAGCTAGATCAGCTCAATGTGCTGAATCTTTCATTTAATCACCTCAAGGGTGGTTTTCCTGTAGAGTTCTCCAAGTTGAAGCAGTTGAAGTTCCTTGATGTGAGCCATAATATGCTGTCTGGACCTGTTGCTGAGGCTCTTTCTGGTTTGCAATCCATTGAAGTATTGAATATTTCTAGCAATTCACTCTCTGGAGTTCTCTTCCCTTTTGGGGAATTCCCACATCTCCTTGCTCTCAACGTTAGTAACAATTCATTCACAGGAAGTTTCAATTCACAAGTTTGCAGTTCTTCCAAGGGTCTTCACACCCTTGATTTATCTACAAATCATTTTGCTGGTGGTCTTGAAGGCTTGGACAACTGCACCACATCTCTCCAACAGTTGCATTTGGATAGAAATTCATTTTCTGGCCCTCTTCCAGATTCCTTGTATTCAATGTCAGCCTTGGAGGAACTCTCATTCTCTGCCAACAATTTATCTGGCCAGTTAAGCAAGCAACTAAGTAAGCTCTCTAACTTGAAAAAGCTGGTGGTTTCTGGAAACCGGTTTTCTGGGGAAATTCCGAATGTGTTTGGGAACCTTTTGCAGCTACAAGAATTAGAAGCACGTGCCAATTCATTTTCTGGGCCCTTACCTTCCTCCTTGGCTTTATGCTCTAAGCTTAGGGTGCTTAATCTTAGGAATAATTCCTTGTCAGGGCCTATAGATCTTAATTTCACTGGCTTGTCTAGTCTCCAAACACTTGACCTTGCTACTAATCATTTCATTGGACACCTTCCAACTTCCCTGTCCTATTGCCGTGAATTGAAAGTTTTAAACCTTGCTAGGAATGGTTTAACTGGTTTTGTCCCTGAAAACTATGCCAACCTCACTTCACTCTTGTTTGTATCCTTGTCAAACAACAGCATTGAGAACTTATCTGGGGCGGTCTCTGTTCTGCAGCAGTGCAAAAATCTCACCACCCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTTCAGAAAGTGTAAAAGTTGGATTTGAGAGCCTTATGATTTTAGCACTTGGAAATTGTGGTCTTAAAGGCCATATTCCTTCTTGGCTATCCAATTGCAGGAAGTTGGCTGTGCTTGACTTGTCTTGGAACCATTTGAATGGTAGTATTCCTTCTTGGATTGGTCAGATGGACAATTTGTTCTACTTGGATTTCTCAAATAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAAGGGCCTCATGTGCCCAAACTGTAGTAGAGAAAATCTTGCTGCATTTGCATTCATTCCTCTCTTTGTCAAGAGAAACACTAGTGTGAATGGGCTGCAATATAACCAGGCCTCAAGTTTCCCTCCTTCAATTTACTTGAGCAACAACATATTAAGTGGAAATATATGGCCTGAAATTGGTCGATTGAAAGCACTGCATGTCTTAGATTTCAGCAGGAACAACGTCACCGGTACCATTCCTAGCACTATTTCAGAGATGGAGAACTTGGAATCTTTAGATTTATCTTATAATGATCTGTCTGGAGAAATTCCTTCATCATTTAACAATCTCACATTCTTGTCAAAGTTCAGTGTGGCATATAATCGCCTAGAAGGACCAATTCCAACCGGGGGGCAGTTTTTAAGCTTCCCTAGTTCTAGCTTTGAAGGCAACCTGGGGCTTTGTAGGGGAATTGATTCTCCTTGCAAAACTGTCAACAATACAAAGCCTATCACCACTTCTGGTTCTTCCAGAAAACATGGTAGAGGCAATGTCCTTGGCATAACAATCAGTATAGGCATAGGGCTTGCACTGCTTCTTGCAATTATTTTGCTAAGAATGTCAAGGAGGGATGGAGATAAGCCTATCGATAACTTTGATGAGGAACTGGGTAGCAGACCACACAGAAGGCCTGTGGAAGTGATCAAGGGGAAGAATTGCAGAAATCTGGTTTCTTGGGTGTTTCAGATGAAATCTGAGAATAAGGAGCAGGAAATTTTTGATCCAGCAATTTGGCTGAAGGATCATGAGAAACAGCTATTGGAGGTGCTTGCCATTGCTTGTAAATGCCTAGACCAAGATCCTAGGCAGAGACCCTCTATCGAAGCAGTTGTTTCATGGCTTGATAGTGTAAGATTTGATGGACCTCAACAATGTTCTTAG 2475 0.4238 MVLLRCFSVTLLQWCFLACLLCLSLGLGNQAPSCDPHDLSALKEFAGNLTSGSITTAWSNDTVCCNWLGVVCDNVTGGGGTVASRVTKLILPQMGLNGKISPSLGQLDQLNVLNLSFNHLKGGFPVEFSKLKQLKFLDVSHNMLSGPVAEALSGLQSIEVLNISSNSLSGVLFPFGEFPHLLALNVSNNSFTGSFNSQVCSSSKGLHTLDLSTNHFAGGLEGLDNCTTSLQQLHLDRNSFSGPLPDSLYSMSALEELSFSANNLSGQLSKQLSKLSNLKKLVVSGNRFSGEIPNVFGNLLQLQELEARANSFSGPLPSSLALCSKLRVLNLRNNSLSGPIDLNFTGLSSLQTLDLATNHFIGHLPTSLSYCRELKVLNLARNGLTGFVPENYANLTSLLFVSLSNNSIENLSGAVSVLQQCKNLTTLILTKNFHGEEISESVKVGFESLMILALGNCGLKGHIPSWLSNCRKLAVLDLSWNHLNGSIPSWIGQMDNLFYLDFSNNSLTGEIPKSLTELKGLMCPNCSRENLAAFAFIPLFVKRNTSVNGLQYNQASSFPPSIYLSNNILSGNIWPEIGRLKALHVLDFSRNNVTGTIPSTISEMENLESLDLSYNDLSGEIPSSFNNLTFLSKFSVAYNRLEGPIPTGGQFLSFPSSSFEGNLGLCRGIDSPCKTVNNTKPITTSGSSRKHGRGNVLGITISIGIGLALLLAIILLRMSRRDGDKPIDNFDEELGSRPHRRPVEVIKGKNCRNLVSWVFQMKSENKEQEIFDPAIWLKDHEKQLLEVLAIACKCLDQDPRQRPSIEAVVSWLDSVRFDGPQQCS 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01116 824 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515
Cca10g01116 824 Pfam Leucine rich repeat 229 288 IPR001611 GO:0005515
Cca10g01116 824 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 175 284 - -
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 283 439 - -
Cca10g01116 824 Gene3D Ribonuclease Inhibitor 171 264 IPR032675 -
Cca10g01116 824 SUPERFAMILY L domain-like 34 305 - -
Cca10g01116 824 Gene3D Ribonuclease Inhibitor 265 367 IPR032675 -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 175 284 - -
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 563 621 - -
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 165 - -
Cca10g01116 824 SMART LRR_typ_2 347 371 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 275 298 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 604 627 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 107 130 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 395 418 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 494 518 IPR003591 -
Cca10g01116 824 SMART LRR_typ_2 131 154 IPR003591 -
Cca10g01116 824 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Cca10g01116 824 Gene3D Ribonuclease Inhibitor 38 157 IPR032675 -
Cca10g01116 824 Gene3D Transferase(Phosphotransferase) domain 1 723 821 - -
Cca10g01116 824 SUPERFAMILY L domain-like 549 674 - -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 563 621 - -
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 740 816 - -
Cca10g01116 824 SMART LRR_sd22_2 251 280 - -
Cca10g01116 824 SMART LRR_sd22_2 395 413 - -
Cca10g01116 824 SMART LRR_sd22_2 604 630 - -
Cca10g01116 824 SMART LRR_sd22_2 131 157 - -
Cca10g01116 824 SMART LRR_sd22_2 494 520 - -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 617 740 - -
Cca10g01116 824 SUPERFAMILY RNI-like 226 527 - -
Cca10g01116 824 Pfam Leucine Rich repeat 469 485 IPR001611 GO:0005515
Cca10g01116 824 Gene3D Ribonuclease Inhibitor 368 681 IPR032675 -
Cca10g01116 824 SUPERFAMILY Protein kinase-like (PK-like) 749 817 IPR011009 -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 165 - -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 740 816 - -
Cca10g01116 824 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 283 439 - -
Cca10g01116 824 Pfam Leucine rich repeat N-terminal domain 36 73 IPR013210 -
Cca10g01116 824 PANTHER PHYTOSULFOKINE RECEPTOR 2 617 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01116 Cca-Chr10 14161727 14164897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01116 16 713 Miscellaneous Gene Families AT1G17240 40.363 7.68e-153 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01116 - - gmx:100797812 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01116 10 14161727 14164897 Cca10g01116 10 14161727 14164897 ECH