Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01114 ATGAAAGAGAAGATGGCGGCAAGTACTAGTTCAGGTGGAACAGAAACACCTCTATTAAGGGAAAATGATAATGGAAGAGAAAACACAAGACCTCAAGTTGTGGGGTGGTGGAATAAAGTGTTGGACATGGAAGAGGCCAAGCATCAACTCTTGTTTTCACTGCCAATGATTCTTACCAACTTGTTCTATTACTTAATCACTTTGGTTTCTGTCATGCTTGTTGGTCACCTTGGTGAGCTTCAGCTTGCTGGTTCTACTCTCGCAAACTCGTGGTTCAGTGTCACAGGCGTTGCTGTTATGGTTGGTTTGAGTGGGGCACTGGAAACACTGTGCGGGCAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCTTGCATCATATCTCTTATTTTCTCCTTCATTATATCAATTATTTGGTTCTATACAGAACCCATCCTAGTGTTGCTTCATCAATCTCAAGACATTGCAAGAACAGCTGCTCTTTATATGAAGTTTTTTATCCCGGGATTGTTTGCATATAGCTTTTTGCAAAACATCTTGAGGTTTCTTCAGACACAATCTGTGGTAATGCCATTGATTGTACTATCAGCTCTTCCATTGTTGCTTCATATTGGTATTGCATATGGCTTGGTTCAGTGGTCAGGTCTAAGTCTTACTGGTGCACCAGTTGCAGCTTCTATTTCACTATGGATATCAATGCTATTATTGGCCCTCTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAAGGACTTTCAATGCACTCATTCCATTATGTTTTTACAAACATGAAACTAGCTCTACCCTCTGCTGCGATGGTATGTTTGGAGTACTGGGCCTTTGAAGTTTTGGTTTTCTTAGCTGGACTATTGCCTGACTCACAGATAACAACTTCGTTGCTTGCAATATGTGCAAACACAGAATTCATTGCCTACATGATCACTTATGGTCTCAGTGCGGCTGCAAGCACGAGGGTATCCAATGAATTGGGAGCAGGCAACCCGGAACGAGCTAAACATGCAATGAATGTCACTCTCAAGCTCTCTCTCCTCCTCGGTTTCTGTTTTGTTTTGGCACTTGGCTTTGGTCATAATATCTGGATTCAGTTTTTCAGTGATAGTTCCACAATTCAAAGGGAGTTTGCTTCAGTGACACCCTTGCTTGCCATTTCCATATTACTAGATGCTATCCAAGGTGTCTTGTCAGGGGTGACCAGAGGATGTGGCTGGCAGCACTTGGCGGTTTATATTAACCTTGCAACATTTTATCTTATTGGTTTACCAATATCATGCCTCCTAGGATTTAAGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTGATTTGTGGGCTGCTTTGTCAAACTGTGACACTGTTCCTTGTCATAAGGCGTGCCAAATGGACTAAACTGGATGTCTCCGGGGACAAAGATAAAGAACAACCTCATGTTGTTTAA 1479 0.4206 MKEKMAASTSSGGTETPLLRENDNGRENTRPQVVGWWNKVLDMEEAKHQLLFSLPMILTNLFYYLITLVSVMLVGHLGELQLAGSTLANSWFSVTGVAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSFIISIIWFYTEPILVLLHQSQDIARTAALYMKFFIPGLFAYSFLQNILRFLQTQSVVMPLIVLSALPLLLHIGIAYGLVQWSGLSLTGAPVAASISLWISMLLLALYVMYAKKFKQTWQGLSMHSFHYVFTNMKLALPSAAMVCLEYWAFEVLVFLAGLLPDSQITTSLLAICANTEFIAYMITYGLSAAASTRVSNELGAGNPERAKHAMNVTLKLSLLLGFCFVLALGFGHNIWIQFFSDSSTIQREFASVTPLLAISILLDAIQGVLSGVTRGCGWQHLAVYINLATFYLIGLPISCLLGFKTNLQYKGLWIGLICGLLCQTVTLFLVIRRAKWTKLDVSGDKDKEQPHVV 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01114 492 CDD MATE_eukaryotic 45 477 IPR045069 GO:0042910|GO:1990961
Cca10g01114 492 Pfam MatE 276 437 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g01114 492 Pfam MatE 55 214 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g01114 492 MobiDBLite consensus disorder prediction 1 27 - -
Cca10g01114 492 TIGRFAM matE: MATE efflux family protein 55 452 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g01114 492 PANTHER PROTEIN DETOXIFICATION 25 486 - -
Cca10g01114 492 PANTHER MULTIDRUG RESISTANCE PROTEIN 25 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01114 Cca-Chr10 14119148 14122516 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01114 K03327 - gmx:100816310 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01114 10 14119148 14122516 Cca10g01114 10 14119148 14122516 ECH