Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01113 atgaaagaggaaatagagaagatgGTGGCAAGTCCTAGTTCATATGGCACAGAAACACCTCTATTGAGGGAAACTGATATTGGAAAACAAAACACAAAACACCAAGTTGGAGGATGGTGGAATAAAGTGTTGGACATGGAAGAAGCCAAGCATCAACTCTTGTTTTCACTACCAATGATTCTTACTAACTTGTTCTATTACTTGATCACTTCGGTTTCTGTCATGCTTGTTGGTCACCTTGGCGAGCTTCAGCTTGCTGGTGCTACTCTCGCAAACTCATGGTTCAATGTCACTGGCGTAGCAGTCATGGTTGGTTTGAGTGGGGCACTGGAAACACTGTGCGGACAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCATGCATCATATCTCTTATTTTTTCCATCATTATATCCATTATTTGGCTCTATACAGAACCCATCCTAGTGCTGCTTCATCAATCTCATGACATAGCAAGAACAACTGCTCTTTATATGAAGTTTCTGGTCCCAGGATTATTTGCATATGGCTTATTGCAAAATATGTTGAGGTTTCTCCAGACACAATCTGTGGTAATACCATTGGTTGTACTCTCAGCTCTTCCATTGTTGATTCATATTGGTATTGCATATGCCTTGGTTCAGTGGTCAGGTCTGAGTTTTACAGGTGCACCAGTTGCAGCTTCTATTTCACAATGGATGTCAATGCTTTTACTGGCCATGTATGTCATGTATGCTAAGAATTTCAAGCAGACATGGCAAGGATTTTCAATGCACTCATTCCATTACGTATTTACAAACATGAAACTAGCCCTGCCCTCTGCTGCAATGGTATGTTTGGAGTATTGGGCTTTTGAAGTTTTGGTTTTCTTAGCTGGATTGTTGCCTGACTCGCAGATAACAACTTCGTTGGTTGCAATATGTTTAAACACACAATTCATTGCATACATGGTTCCTGTTGGTCTTGGTGCAGCTGCAAGCACAAGGGTATCCAATGAATTGGGAGCAGGCAACCCGGAACTAGCTAAACATGCAATGAATGTCACTGTCAAGCTCTCTTTCCTCCTAAGTTTCTGTTTTGCTTTGGCACTTGGATTTGGTCATAATATCTGGATTCAGCTTTTCAGTGATAGTTCTACAATCAAAGAGGAGTTTGCTTCAGTGACACCCTTGCTTGCCATTTCCATAGTACTAGATGCTGTCCAAGGTGTCATGCAAGGTGCAACCAGAGGATGTGGTTGGCAACACTCAGCTGCTTATATTAACCTTGCAAATTTTTATCTTGTTGGCTTACCAATATCATGTCTCCTAGGATTTACGACCAATTTGCAGTATAAGGGTTTATGGATTGGTCTAATTTGTGGGCTGCTCTGTCAAGCTGGAACTCTCTTCTTTTTCTTAAGGCGTGCCCAATGGACTAAATTGGATCTCTCTGGGGACAAAAGATAA 1467 0.4097 MKEEIEKMVASPSSYGTETPLLRETDIGKQNTKHQVGGWWNKVLDMEEAKHQLLFSLPMILTNLFYYLITSVSVMLVGHLGELQLAGATLANSWFNVTGVAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSIIISIIWLYTEPILVLLHQSHDIARTTALYMKFLVPGLFAYGLLQNMLRFLQTQSVVIPLVVLSALPLLIHIGIAYALVQWSGLSFTGAPVAASISQWMSMLLLAMYVMYAKNFKQTWQGFSMHSFHYVFTNMKLALPSAAMVCLEYWAFEVLVFLAGLLPDSQITTSLVAICLNTQFIAYMVPVGLGAAASTRVSNELGAGNPELAKHAMNVTVKLSFLLSFCFALALGFGHNIWIQLFSDSSTIKEEFASVTPLLAISIVLDAVQGVMQGATRGCGWQHSAAYINLANFYLVGLPISCLLGFTTNLQYKGLWIGLICGLLCQAGTLFFFLRRAQWTKLDLSGDKR 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01113 488 CDD MATE_eukaryotic 48 480 IPR045069 GO:0042910|GO:1990961
Cca10g01113 488 Pfam MatE 58 217 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g01113 488 Pfam MatE 279 440 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Cca10g01113 488 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 485 - -
Cca10g01113 488 PANTHER PROTEIN DETOXIFICATION 27 485 - -
Cca10g01113 488 TIGRFAM matE: MATE efflux family protein 58 455 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01113 Cca-Chr10 14108116 14111557 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01113 K03327 - gmx:100808113 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01113 10 14108116 14111557 Cca10g01113 10 14108116 14111557 ECH