Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01110 ATGTTTCTTTTTAACATTGTCTTGTACCATGCTTTTATTTTCTTTTCCGTAATACTATTTTCATTTGATTCTGGTCCTCTCCACAAATGGCAGATCACTCACATGGAAATGATAAAAGGAATCAAGGGACATGGTTATTATGATGAACTTGTGGTCCCCATAATTGAGAACACGGCCTATGAGTATCAGCTCACAGAATCCTTTGCTAAAGCTATTGAAGACTACCCAAAAGCAACAGCTGTGCTTGTTCGCAACCATGGAGTATTTGTCTGGGGAGACTCATGGATCAGTGCTAAAACTCAGTCTGAGTGTTACCATTACCTCTTTGATGCTGCTATCAAGCTTCACCAAATGGGATTGGACTGGTCAACTCCAAATCATGGTCCAATACAAAGTGCAAGAAGGGGTCTAACTCTTGCTGGGGAGTCAAATGTGTCAGTTAAGGCAAGGAAATCTAATGGTGAAATTGATCCATTCCCACGTTGCATTGTTCTTGACATTGAGGGAACTACTACTCCCATATCATTTGTTTCAGAGGTTCTCTTCCCATATGCCCGTGATAATGTTGGGAAGCATCTATCTCTAACATATGATACCCCTGATACTAAAGCTGATATCAAGTTGCTTCGTTCCCAAGTTCAAAGTGACCTTGAACAAGGCATTGCAGGTGCTGTTCCTATCCCTCCAGATGATGCTGGGAAAGAGGAAGTCATTGCTGCAATCGTTGCTAATGTGGATGCTATGATTAAAGCTGATAGAAAAATCACTGCCTTAAAAGAGTTGCAGGGTCATATATGGAGAACTGGTTATGAGAATAATGAATTGGAGGGAATAGTTTATGATGATGTACCAGAAGCTCTAGAAAAGTGGCATGCTTTGGGTATAAAGGTGTACATATATTCTAGTGGAAGCAGGTTGGCTCAAAGGCTAATTTTTGGAAAAACGAACCATGGAGACCTAAGAAAATATTTATCTGGGTTTTTTGATACCACAGTGGGGAACAAAAGAGAGACCCGCAGTTATGTTGAAATTTCTGAGTCACTTGGTGTTGATAAACCATCAGATATTTTATTTGTCACTGATGTATATCAAGAAGCCACAGCTGCAAAGGCAGCAGGCTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGCTTCAAGACAATCAAATCCTTCTCGGACATCTAA 1209 0.4069 MFLFNIVLYHAFIFFSVILFSFDSGPLHKWQITHMEMIKGIKGHGYYDELVVPIIENTAYEYQLTESFAKAIEDYPKATAVLVRNHGVFVWGDSWISAKTQSECYHYLFDAAIKLHQMGLDWSTPNHGPIQSARRGLTLAGESNVSVKARKSNGEIDPFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGKHLSLTYDTPDTKADIKLLRSQVQSDLEQGIAGAVPIPPDDAGKEEVIAAIVANVDAMIKADRKITALKELQGHIWRTGYENNELEGIVYDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGKTNHGDLRKYLSGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVYQEATAAKAAGLEVIISIRPGNGPLPDNHGFKTIKSFSDI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01110 402 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 29 402 - -
Cca10g01110 402 CDD HAD_EP 162 383 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca10g01110 402 Gene3D - 270 402 IPR023214 -
Cca10g01110 402 SUPERFAMILY HAD-like 161 402 IPR036412 -
Cca10g01110 402 SUPERFAMILY AraD/HMP-PK domain-like 32 127 IPR036409 -
Cca10g01110 402 Pfam haloacid dehalogenase-like hydrolase 161 373 - -
Cca10g01110 402 Gene3D - 174 269 - -
Cca10g01110 402 Pfam Class II Aldolase and Adducin N-terminal domain 43 112 IPR001303 -
Cca10g01110 402 Gene3D - 13 129 IPR036409 -
Cca10g01110 402 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 161 401 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca10g01110 402 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 29 402 IPR017714 GO:0005737|GO:0019509|GO:0046872
Cca10g01110 402 SFLD enolase-phosphatase 161 401 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca10g01110 402 Hamap Enolase-phosphatase E1 [mtnC]. 159 402 IPR023943 GO:0000287|GO:0019509|GO:0043874
Cca10g01110 402 SFLD C1.5: HAD, Beta-PGM, Phosphatase Like 161 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01110 Cca-Chr10 14053938 14061771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01110 K16054 - gmx:100796209 729.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01110 10 14053938 14061771 Cca10g01110 10 14053938 14061771 ECH