Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01106 ATGGCTGCTGCCACTATCTTTGGAACTGCGTGCTGTCTAAGAAGAGCAGCTCAGCTATTTGCAATCTCTCATTCTCATACTCTCCGCAGTAACGCCGCCCTCTCTTTTCAAAGGAACCTTTGCTCCAATCTTCTCTCTGTTTCTACTTCTTCAGCTTCAGGTGTAAGCCAGACTGTACAAGCTTTAAAAGGAGACGTTGACTTGTTACTCAAGGGAGTAGGAGATCGAAGTATAACAAAAGAAGTGAAACATATTCTTGAGATGGCTAGACGAGCATCATTAAAGCGAGAGATTCTCCATACAGATTTTCTAACCCCTCCAGTGCTAAAGGAATCTATGCAAGTTTTGGAAAAATTAGCAGACGTGAAAGCAATTGCTCAAGGAGGTTATCCTCAGGCTGAACGTTGTCGGATTTCTGTTGGACATCCAGAAGAACTGACCAGTGATCCAGATATTATTTCAGCATTAAGCATCACAGGGAACTTCCAGTTTGAACCTTGCTCGCATGGTGACTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGACAAACTTGGAGATATTATATTGCAGGGAGAGCAGGGTGCTCAGCTAATTGTTGTACCAGAACTCGTTGAATTTCTCATGTCAACACTGGTTAAGGTTCGTAATGTTCCTGTGTCTTGCACCAAGATACCATTAATTTCTCTAGATTATGAACCACCAAGAACAAAATCATTCAAAACTATAGAGGCATCGCTAAGAGTGGATGCACTGGCAAGTGCTGGATTTAAGGTTTCGCGTTCAAAGCTAGTTGAAATGATCAGCAATGGTGATGTGCGTATCAACTGGATCCCTGTTACTACCAAAGGAACCACACTCAAGAGTGGGGATATTGTATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCGACAAAGAAAGGAAAGTTTGCAGTGGAACTCATTCGGTATTTGTAG 972 0.4218 MAAATIFGTACCLRRAAQLFAISHSHTLRSNAALSFQRNLCSNLLSVSTSSASGVSQTVQALKGDVDLLLKGVGDRSITKEVKHILEMARRASLKREILHTDFLTPPVLKESMQVLEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILGTGIVRDKLGDIILQGEQGAQLIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDALASAGFKVSRSKLVEMISNGDVRINWIPVTTKGTTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01106 323 Gene3D - 242 299 IPR036986 GO:0003723
Cca10g01106 323 Pfam Putative RNA-binding domain in YlmH 154 228 IPR040591 -
Cca10g01106 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 55 323 - -
Cca10g01106 323 TIGRFAM PS_II_S4: photosystem II S4 domain protein 79 321 IPR017506 -
Cca10g01106 323 CDD S4 249 303 - -
Cca10g01106 323 Gene3D - 79 141 - -
Cca10g01106 323 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 55 323 - -
Cca10g01106 323 SMART s4_6 248 308 IPR002942 GO:0003723
Cca10g01106 323 Gene3D - 149 231 IPR012677 -
Cca10g01106 323 ProSiteProfiles S4 RNA-binding domain profile. 248 308 - -
Cca10g01106 323 SUPERFAMILY Alpha-L RNA-binding motif 107 311 - -
Cca10g01106 323 Pfam S4 domain 252 294 IPR002942 GO:0003723
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01106 - - gmx:100793767 564.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01106 10 14005583 14010899 Cca10g01106 10 14005583 14010899 ECH