Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01096 ATGGACCCTGACGTCGTCGAGATTCCTCCCCCAATTCACCCCTCTTCCAATTTCTACGACCACAACAAGGTCATTTTGCATGATGTGATTGAGATTGACAATGATGATGACTCTGAGGATGTAGTGATAATCGGCGAAAAAGTTAATAGTAGTAGCAAAGGGAAGACAATTGATGCTGTTCATGATGATCATCAACTTGTGAAAATGCCTGATTATGCTTTCTCTCTACCTGGTGTGAACAATTTTGGATCAGCTAGTGGAATTGCATCTTCTAACGGTTTCCCTTCAGTGTCAAATGATTTAATCAATATTGATGATAGTCATGGTTCTGAATATGAAGATGATGACTTCATTGATATTGTTTCAGAAGATTATATGGACGTAGATGAGTATGCTTTATTACAGAAACACTTTGATAATGTGGATATACCTCCTGGAATTGAAGCACCTATGACTTGGTTGCCACCAGGCTATGACATAGGTTTGAATAAGACTGGCAACAGTACATTATATGATCCTTGGCTTCATATGCAATCAAGTGCTATAAAAGGTCCAATGACGCCCTCTACTCAGTCTTCTTTATCATTAGAGCCAACTAACTCTATAGTTCAAGGATCTTTGGTGGGTAGTTCTAACATTCAAATCAAAATGGATAATGTTGATCACTCTTCTGGAATGTCTTTTTCTCCTCAATTATTTTCTCAATCTGCCCCTTGTAAGAAGAAATTAGTTACTTCAAAAATCAGAGGGCGTACATCAAATGCTTCATTAGGAGTAGAGTCATCTAAGTCTCACTGCTTTTTAGGGAATTTCCATAGTAAAAAGAAGCTTTCCTCATCATACAATGGTTTTATTGACAATTCAGAGGCTGTGAAGATGCCACATGCAGGTGAGCCACCATATTGGGGGCAATTTAAAAGTGCTAAGAAGGCAGATGGCAGTAGCACTTCATCCCATTCAAATTTCATTGGACTTCATGGATCATTGCATCCTGTGGGAATAGATTCAGGAAAACCTTGGTGGAAGATTTCTCATAAAACTAAACCATTATCTACTCCTCATAATAATATTCCTAATCATATTTATCATCCATTTGATCCTCTTCATGCCCATCCTGAGCATGTATTTGATAATAACTGGGTACATGATTCTACTAGAGATGGATTTAGTGGAACAGCTGTGGACAGCTCAATTTTGACAATCTCTGACGAAGCGAAAGATGAAATTCTGAGGAAATTCCAAAGTTTTAAACAATTTGACACTGTTGAAGACACTTCAGACCATTACTTTGTTCATGTTAATTCTTCAGTGAAGCAGTCTCCCAAGAATTGGGCTAAAAAAATTCAGGAAGAGTGGAAGATTTTGCAGAAGGATTTGCCAGATTTAATATTTGTTAGAGTTTATGAGTCAAGGATGGATCTTCTAAGAGCTGTCATTATTGGAGCAGAAGGGACTCCTTATCACGATGGCCTTTTCTTTTTTGATGTTTTCTTTCCCAGTAGCTATCCTAGTGTACCGCCGCAAGTTCATTACCACTCTGGAGGTCTTCGGCTCAACCCAAATTTGTATGATTGTGGAAAAGTGTGCCTTAGTCTACTTAACACCTGGTCTGGCAACAAAAATGAGAAGTGGCTTCCAGGTGTTTCAACGATTCTACAGGTTCTGGTCTCTATACAAGGTCTAATCCTGAATACAAAGCCTTACTTTAATGAACCTGGATATGCACGCATGAGTGGTTCAGCAAATGGCGAAAAGAAATCCTTTCAGTATAATGAGGATACATTCATTCTATCATTGAGGACGATGATGTATATGATACGAAGGCCTCCAAAGAATTTCGAGGACTTCGTTGTGGGGCATTTCTGCAGCCGAGCTAGTGATATTCTGGTGGCATGCAAAGCATACATGGAAGGTGCTCAAGTTGGCTGTTTGGTCAAAGGAGGGGTTCAGGACGTTGATGAGGGTGACAAGAGCTGCTCAGAGCGATTTAAGGAGTCTTTATCTGGATATATGAACATGCTTGTCAAAGAGTTTGCTCAAATTGGAGCAAAGGACATTGAGAAATTCCTGCCTCCAGCAACAACACTAGTAGTGAACAATCCATCAGGTGTTGATTCCCCGGTTGCAACCTGA 2133 0.3962 MDPDVVEIPPPIHPSSNFYDHNKVILHDVIEIDNDDDSEDVVIIGEKVNSSSKGKTIDAVHDDHQLVKMPDYAFSLPGVNNFGSASGIASSNGFPSVSNDLINIDDSHGSEYEDDDFIDIVSEDYMDVDEYALLQKHFDNVDIPPGIEAPMTWLPPGYDIGLNKTGNSTLYDPWLHMQSSAIKGPMTPSTQSSLSLEPTNSIVQGSLVGSSNIQIKMDNVDHSSGMSFSPQLFSQSAPCKKKLVTSKIRGRTSNASLGVESSKSHCFLGNFHSKKKLSSSYNGFIDNSEAVKMPHAGEPPYWGQFKSAKKADGSSTSSHSNFIGLHGSLHPVGIDSGKPWWKISHKTKPLSTPHNNIPNHIYHPFDPLHAHPEHVFDNNWVHDSTRDGFSGTAVDSSILTISDEAKDEILRKFQSFKQFDTVEDTSDHYFVHVNSSVKQSPKNWAKKIQEEWKILQKDLPDLIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSSYPSVPPQVHYHSGGLRLNPNLYDCGKVCLSLLNTWSGNKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYARMSGSANGEKKSFQYNEDTFILSLRTMMYMIRRPPKNFEDFVVGHFCSRASDILVACKAYMEGAQVGCLVKGGVQDVDEGDKSCSERFKESLSGYMNMLVKEFAQIGAKDIEKFLPPATTLVVNNPSGVDSPVAT 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01096 710 Pfam Ubiquitin-conjugating enzyme 448 588 IPR000608 -
Cca10g01096 710 Gene3D Ubiquitin Conjugating Enzyme 402 684 IPR016135 -
Cca10g01096 710 SUPERFAMILY UBC-like 433 610 IPR016135 -
Cca10g01096 710 CDD UBCc 446 572 IPR000608 -
Cca10g01096 710 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 18 692 - -
Cca10g01096 710 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 18 692 - -
Cca10g01096 710 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 443 603 IPR000608 -
Cca10g01096 710 SMART ubc_7 446 603 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01096 Cca-Chr10 13863843 13871278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01096 411 693 Miscellaneous Gene Families AT2G33770 50.877 1.35e-87 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01096 K10581 - ccaj:109805727 1395.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01096 10 13863843 13871278 Cca10g01096 10 13863843 13871278 ECH