Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01090 ATGGCCACCGTGCAACTCCAATCCCTAACCCTCATTCGCTCCTCCGCACTCCCTTCCGCCACCTTCTCTCCTCCCATCGCCGTCACCGGCCGCCGTAACTCATCCGCGTTGCCGCGCTTCTCCGGCCTCAGGCTTCGACCCTCCGCCGAGACCGGTTTTCCGACACGCCCCGGCTCGAGAACCGCTCCTCGCGGTGGACGCATCGCGTGCGAGGCACGAGACACCGCCGTTGAAGTGGCTCCTATTACTGATGCAAATTGGCAACCACTCGTGCTTGAATCTGAGTCTCCTGTATTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGTATGATCCACCCAATAATCGACGAGCTGGCAAAGGAATATGCTGGTAAGCTGAAGTGTTACAAACTCAATACTGATGAGAGCCCTTCAACTGCTACTCGATATGGCATTCGAAGTATCCCAACTGTGATTTTTTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCGAAGACTACATTGACCTCAAGCATAGAAAAATTATTGTGA 549 0.5337 MATVQLQSLTLIRSSALPSATFSPPIAVTGRRNSSALPRFSGLRLRPSAETGFPTRPGSRTAPRGGRIACEARDTAVEVAPITDANWQPLVLESESPVLVEFWAPWCGPCRMIHPIIDELAKEYAGKLKCYKLNTDESPSTATRYGIRSIPTVIFFKNGEKKDTVIGAVPKTTLTSSIEKLL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01090 182 CDD TRX_family 85 179 - -
Cca10g01090 182 PANTHER GEO12009P1 1 182 - -
Cca10g01090 182 TIGRFAM thioredoxin: thioredoxin 83 181 IPR005746 GO:0015035
Cca10g01090 182 Pfam Thioredoxin 79 179 IPR013766 -
Cca10g01090 182 SUPERFAMILY Thioredoxin-like 76 182 IPR036249 -
Cca10g01090 182 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Cca10g01090 182 ProSiteProfiles Thioredoxin domain profile. 49 182 IPR013766 -
Cca10g01090 182 PRINTS Thioredoxin family signature 98 106 - -
Cca10g01090 182 PRINTS Thioredoxin family signature 106 115 - -
Cca10g01090 182 PRINTS Thioredoxin family signature 146 157 - -
Cca10g01090 182 Gene3D Glutaredoxin 79 182 - -
Cca10g01090 182 PANTHER THIOREDOXIN M-TYPE PROTEIN 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01090 Cca-Chr10 13815812 13820236 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01090 K03671 - gmx:100811845 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01090 10 13815812 13820236 Cca10g01090 10 13815812 13820236 ECH