Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01086 ATGAGGGGTCCTTTGGGTGCAGTTATAGGGAGGTACCCTTCAAGTGATGGAACCACCCATTTGGGTGGCATCATCAGGCACAACAGAAAATGCAGAGACATACCCCTTCTTGTCATCTTTATAGCCTTCTGGGTTGCCATGATCGTCAACTCCAGCTTTGCATTCAACCGAGGAAACCCATTGAGGCTGACTTATGGGCTGGACTACAAAGGAAATGTGTGTGGGGACAAGCATGCAGTTAAAGATCTTAAAGAATTGGAGCTCAGATACTGGTTAAATCCTAATCAGGTTTATCAAAGTGGATTGAAGGATAGCCAATTCAAACTGGCCAATGCCCGCAGTATATGCTTGCTGGACTGCCCTGTACCTTCTGAAGATTCACTTACTTGGGTGTGTGATTATCCTGAAGGAGATATTCGCGTTTCAATGAATGATTGGATTGATATGAACTATGATTATTTTGAGTTCCTTACGCCAGAAATGAGAAACTCCTCTCTTCAGCTTCAGGGCCCTTGTTATCCTGTCATATTTCCTAGTGTAAATGTTTACTGGAGTTGCGAATTCATTGCCAGAGCATCAAATGTATCATTAAAGCATTGGAAGCAGATGGGTGGAGTTACCATCAATGAAGACATTGTTCTTGATAAGGCCATTCACGAGTATATCAATTCTCACTCAGCTGTCTTAAAGAGATACATGGCTGACATAGGAAAGGCATGGCCTGTGCTGATTGTTTGTGGAGGGATTTTACCTCTGTTTCTGTCTGTGATTTGGCTGCTGCTGATTCGGCATTTAGTTGCTGCCATGCCTTGGATTACAGTGGTTTTGTTCAATGTTCTAATAGTATCAGTCACAATGTTTTTCTATCTAAAAGTTGGATGGATAGGAAATGATGCTATTTCCCCCATTGTTGGTGAGCATGATCCTTACATTCATGTATTTGGGAGGGAGCTGACTCATCTACGTGTTGTCACTGTCCTTATGACCTTTATCATGCTTGTTGCCATTCTTACATCAATTGCTGTTGTCCGGCGCATCCTTATGGCATCTTCTGTCCTTAAGGCAAGCATAACCTTATTATATTCAGTTGCTGCAAAAGTGATAGGAGAAGTTCAAGCACTTATTATTTTTCCAATCATACCATATGGTATTCTTGCAGTGTTCTATATGTTCTGGATTTCTGCTGCTCTACATTTGTTCAGCTCTGGCCAGGTTGTTCAGAATAAGTGCAACTCTAACTGCTGTGCATATGACCTCTTGGAGAAAAAGGTTATTTGTGATCAGTGTTGTGGATATAGCATTCATTACACACCGCATATTGGAGCTGCCATCCTTTTTCACCTATTTGGCTGTTATTGGGCTACGCAATTTTTTATAGCTTGCTCATCAACAGTGATTGCTGGATCTGTTGCCTCTTATTATTGGACCCATGGTGAAGCATCTCCTGAAATTCCTTTTCTTTCAGTCATTTCCTCCATGAAGAGGCTTATGCGTTACCATCTTGGTTCTGTGGCTCTTGGCTCTCTGACCGTATCGTTTGTAGAGTCGATCCGTTTTCTGCTAGAATCTATTCGCCGGAGACTAAAAGTTTTTAGTCACGTGCCTGACAACTGGATTGGCAAGGCTGCTTACCAATCTTCTCAATATTTTCAAAGGTGTATTGCGTGGACCATCAAATCAGTGAACCGAAATGCTTACATCATGATTGCTATAACGGGTAAAAGTTTCTTTAGAGCTTCTGCCATTGCAACAGAATTGATCATGAATAATATCCTACGGATTGGACGTGTCAATGTGATTGGAGATGTTATTTTGTTCCTTGGAAAACTATGTGTCAGCCTCTCAAGCGCTATTTTTGCTTTCCTCATGTTGGACGCACACAAGTACAAATCTGCACACAAGATCTCATCTCCGCTATTGCCTGTTGTGGTTTGCTGGGCTCTTGGATATATTGTTGCAACCCTTTTCTTTGCTGTTGTAGAGATGTCAATCGACACCATCATTCTCTCATTCTGCCAAGACTCTGAAGAGCATGGGACAGCACAATATGCTCCACCTCTTCTCATTGAAACTCTTGGAGACCAAAATGAGTTGCAGAGACTTACACAAGGACCCCAATGA 2121 0.4206 MRGPLGAVIGRYPSSDGTTHLGGIIRHNRKCRDIPLLVIFIAFWVAMIVNSSFAFNRGNPLRLTYGLDYKGNVCGDKHAVKDLKELELRYWLNPNQVYQSGLKDSQFKLANARSICLLDCPVPSEDSLTWVCDYPEGDIRVSMNDWIDMNYDYFEFLTPEMRNSSLQLQGPCYPVIFPSVNVYWSCEFIARASNVSLKHWKQMGGVTINEDIVLDKAIHEYINSHSAVLKRYMADIGKAWPVLIVCGGILPLFLSVIWLLLIRHLVAAMPWITVVLFNVLIVSVTMFFYLKVGWIGNDAISPIVGEHDPYIHVFGRELTHLRVVTVLMTFIMLVAILTSIAVVRRILMASSVLKASITLLYSVAAKVIGEVQALIIFPIIPYGILAVFYMFWISAALHLFSSGQVVQNKCNSNCCAYDLLEKKVICDQCCGYSIHYTPHIGAAILFHLFGCYWATQFFIACSSTVIAGSVASYYWTHGEASPEIPFLSVISSMKRLMRYHLGSVALGSLTVSFVESIRFLLESIRRRLKVFSHVPDNWIGKAAYQSSQYFQRCIAWTIKSVNRNAYIMIAITGKSFFRASAIATELIMNNILRIGRVNVIGDVILFLGKLCVSLSSAIFAFLMLDAHKYKSAHKISSPLLPVVVCWALGYIVATLFFAVVEMSIDTIILSFCQDSEEHGTAQYAPPLLIETLGDQNELQRLTQGPQ 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01086 706 Pfam Plasma-membrane choline transporter 327 676 IPR007603 GO:0022857|GO:0055085
Cca10g01086 706 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 703 - -
Cca10g01086 706 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 703 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01086 Cca-Chr10 13757935 13764360 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01086 K15377 - gmx:100789185 1318.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01086 10 13757935 13764360 Cca10g01086 10 13757935 13764360 ECH