Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01083 ATGGCgaagaagaaggagaagaagGTGAACGTCTCTGGAAAACCGAAGCACTCTCTGGACGTAAACCGCAGCAATGAGGCGAAGAATGAGTCGCGCTCCGCCGCCACCGTGCGCCGCCTCAAGATGTACAAAACCAGGCCCGTCCGCGACCGTAAGGGAAAAGTCCTCTCCAACGAGTATCAGTCCAAGGACCTTCCGAGCACGCGAATCCAACCCGATCGAAGATGGTTCGGGAACACTCGTGTTGTGAATCAGAAGCAGCTCGAGTTCTTCCGAGAAGAGCTGCAGAGTCGCATGTCAAGTAATTACAATGTGATTCTCAAGGAGAAGAAGCTGCCGCTGTCGCTGCTCAATGATCACCAGAAGCAAGCTAGGGTTCATTTGCTTGATAGAGAGCCTTTCCAAGATGCATTTGGACCTAAGACTAAGAGAAAGCGCCCTAGCCTCTTGGCAGCTGACTATGAGTCCTTACTGAAGAAAGCTGATGGTTCTCAAGATGCTTTTGAACAGAAGTACAGTTCAAGTGTATCTACAGAATCTAATGATGGAGATGGATTTAGGGATTTAGTGCGGCATACCATGTTTGAAAAGGGTCAAAGTAAACGCATATGGGGTGAGCTTTACAAAGTGATAGATTCTTCGGATGTTGTTGTCCAGGTTCTAGATGCAAGGGATCCACAAGGCACAAGGTGTTACCATTTAGAGAAGCATTTGAAGGAAAATTGTAAGCATAAACATATGGTGCTTTTATTGAACAAGTGTGATCTAGTTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCAAAGGAATTTCCAACTCTAGCATTCCATGCAAACATTAACAAGTCCTTTGGAAAAGGTTCTCTTCTATCAGTTCTGAGGCAGTTTTCTCGATTGAAACGTGATAAGCAAGCAATATCTGTTGGATTTGTTGGATATCCAAATGTCGGGAAGTCATCAGTGATAAACACATTGCGTACAAAGAATGTCTGCAAGGTTGCTCCAATTCCCGGGGAAACAAAAGTATGGCAATATATTACTCTTACAAAGAGGATCTTTCTGATTGATTGTCCAGGTGTTGTCTACCAGAACAAAGATTCTGAAACAGATGTCGTGTTGAAGGGTGTGGTACGTGTAACTAATTTGAAAGATGCTGCAGACCATATAGGCGAGGTTTTGAAACGAGTGAAGAAAGAGCATTTGGAGAGGGCATACAAAATAAAAGAGTGGGATGATGAAAATGACTTCTTACTGCAACTTTGCAAATCCAGCGGCAAACTTCTGAAGGTAAACTTCTTGAGTTGA 1311 0.434 MAKKKEKKVNVSGKPKHSLDVNRSNEAKNESRSAATVRRLKMYKTRPVRDRKGKVLSNEYQSKDLPSTRIQPDRRWFGNTRVVNQKQLEFFREELQSRMSSNYNVILKEKKLPLSLLNDHQKQARVHLLDREPFQDAFGPKTKRKRPSLLAADYESLLKKADGSQDAFEQKYSSSVSTESNDGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSKEFPTLAFHANINKSFGKGSLLSVLRQFSRLKRDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNKDSETDVVLKGVVRVTNLKDAADHIGEVLKRVKKEHLERAYKIKEWDDENDFLLQLCKSSGKLLKVNFLS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01083 436 Gene3D - 194 364 IPR027417 -
Cca10g01083 436 PANTHER GTP-BINDING PROTEIN-RELATED 2 431 - -
Cca10g01083 436 Pfam 50S ribosome-binding GTPase 310 412 IPR006073 GO:0005525
Cca10g01083 436 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 391 IPR027417 -
Cca10g01083 436 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 2 431 IPR024929 GO:0005730
Cca10g01083 436 PRINTS GTP1/OBG GTP-binding protein family signature 356 371 IPR006073 GO:0005525
Cca10g01083 436 PRINTS GTP1/OBG GTP-binding protein family signature 310 330 IPR006073 GO:0005525
Cca10g01083 436 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 204 365 IPR030378 GO:0005525
Cca10g01083 436 MobiDBLite consensus disorder prediction 1 36 - -
Cca10g01083 436 CDD NGP_1 206 362 - -
Cca10g01083 436 Pfam NGP1NT (NUC091) domain 42 166 IPR012971 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01083 Cca-Chr10 13698864 13704186 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01083 K14537 - gmx:100781028 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01083 10 13698864 13704186 Cca10g01083 10 13698864 13704186 ECH