Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g01079 | ATGGATCGGTTGCTGAAAGCGGCGAGAGCCTCCGGTTCCCTCAACCTCTCCAATCGATCTCTCCGAGAAGTTCCCGACGAGGTTTACCGGAATCTCGAGGGCCTCGGCGGCGACGACAAGTGGTGGGAGGCTGTGGAGCTTCAGAAGCTTATTCTGGCTCACAATAGCATTGAATTGTTGAAGGAAGATCTGAGGAATTTGCCTTTTCTTGTTGTGTTGAATCTTAGCCACAACTGTCTCTCTCAGCTTCCCGCTGCTATAGGAGAGCTGCCTCAGTTGAAGTTGTTGGACGTTTCGTTCAATTCGCTAGTTCAAATACCGGAGGAGATTGGATCAGCTGTGTCGCTTGTGAAGCTTGATTGTTCGAATAATCGGCTCACGGAACTTCCTAGCTCCCTTGGCAGATGCTTAGAATTGTCAGACTTAAAGGGATCAAACAATCTTATTGCGAGCTTGCCTGAAGATTTAGCAAATTGTTCCAAATTGTCTAAGCTAGATATGGAGGGAAACAAGCTAACAGAGATATCTGAAAATCTCATTTCGTCATGGACCATGCTTACTGAATTCAATGCATCAAAAAATTTGCTGAATGGGATACCAGTAGGGATTGGGGACCTTTCACGTCTAATTCGTCTTGATCTCCATCAAAACAGAATATCAGCAATCCCTTCGTCAATCATTGGCTGTCATTCACTTACGGAACTTTATTTGGGGAATAACAATATTTCTACAGTACCAGTGGAGATAGGTGCCCTTTCTCGACTTGGGACTTTAGATCTTTGCTCTAACCAGCTGAAGGACTACCCAGTAGACGCATGCAAATTGAGTCTTTTAGTCTTGGATCTTTCTAATAATTCATTGAGTGGGTTACCCCCTGAAATGGGTAAGATGACTACATTGAGGAAACTTCTACTCAGTGGAAATCCTTTGAGAACTCTTCGAAGCTCATTAGTATCTGGACCTACACCAGCATTACTAAAATTTCTCCGAAGCAGACTTTCTGAAGATGAAGATTCTGAAGCTGTAACCACAACAAAAGAAGAGGTGATTGCAATGGCTACCCGATTGTCTATCACTTCAAAGGAACTTTCTATGGAAGGGCTAGGTTTGAGTGCTGTTCCATCAGAAGTATGGGAATCTGGGGAGCTCATAAAACTTAATCTTTCCAGAAACTCCATTCAAGAGTTGCCAATTGAACTTTCTTCTTGTGTTTCCCTCCAGACATTGCTTTTATCAAAGAATCAAATTAAAGACTGGCCTGGTTCAATTCTTAAATCACTTTCGAGTCTTACATGTTTGAAACTGGACAACAATCCCCTCAGGAAGATACCTTCAGATGGCTTTGAAGCGGTGCCTAAGCTTCAGATCCTGGATTTAAGTGGTAATGCAGCTTCATTATTAGATGGTCCTGCATTTTCTAGTTTACTATACCTGCAAGAGCTTTACCTAAGAAGAACAAGGCTCAGTGAAGTCCCGTCAGATATAGTGGGGTTGCATCAGCTACAGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAGTGGGGTTAAAAAATCTCACTTCTCTCAGGGAGCTTGACCTATCTGATAACAACATCTCAGTCCTTCCACCTGAGCTGGGTTTGCTGGAACCAAGCCTTCAGGCGTTGAGACTTGATGGGAATCCTCTCAGAAGCATTCGAAGGACCCTGTTGGATAGAGGAACTAAAGCTGTTCTGAATTATTTGAAGGACAAATTGCCAGATCTCAGAGCATCGCACAACCCTCAACGACGTCGTTTAACATCTATATCACTCCATTCAGATTTGCTATGGTGTGTCAGTTTTTACTTGCACAGGAATATGGAGGTAAATTCTGCATCACCATGTCCTGAGGATCAAGATGAATATGTTTTACTCGACTTGGATGGTGTTTCTGACCTAATTCACTTTCCGCCAAATGCAAAGTATGTTCTTACCGGCCTTGATACATTAAACCCAGTATTGATCATTGATGACAAATTCAAGCTGATTGGGGAGTATGAGGAGACAATTGGCACCTGTCTTGCTTTTACAGAACAAGATGCCCCTGTGGTTCATGAAGAAACAGGACCATCTGAAGTGAACCTTTTCTCCGGAGCAAGACTAATTGATTCAAGTCAACCTCCAACAAAGCAAGTGAAACCTGTGTGTCAGCTTCACAGGGTTCTCAAGTTTAAGTTATCCCCTGATTCTGAAATTCAGAGTGTCACAGCTGAGGAGACCAAATGA | 2253 | 0.4305 | MDRLLKAARASGSLNLSNRSLREVPDEVYRNLEGLGGDDKWWEAVELQKLILAHNSIELLKEDLRNLPFLVVLNLSHNCLSQLPAAIGELPQLKLLDVSFNSLVQIPEEIGSAVSLVKLDCSNNRLTELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTEISENLISSWTMLTEFNASKNLLNGIPVGIGDLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNNNISTVPVEIGALSRLGTLDLCSNQLKDYPVDACKLSLLVLDLSNNSLSGLPPEMGKMTTLRKLLLSGNPLRTLRSSLVSGPTPALLKFLRSRLSEDEDSEAVTTTKEEVIAMATRLSITSKELSMEGLGLSAVPSEVWESGELIKLNLSRNSIQELPIELSSCVSLQTLLLSKNQIKDWPGSILKSLSSLTCLKLDNNPLRKIPSDGFEAVPKLQILDLSGNAASLLDGPAFSSLLYLQELYLRRTRLSEVPSDIVGLHQLQILDLSQNSLQSIPVGLKNLTSLRELDLSDNNISVLPPELGLLEPSLQALRLDGNPLRSIRRTLLDRGTKAVLNYLKDKLPDLRASHNPQRRRLTSISLHSDLLWCVSFYLHRNMEVNSASPCPEDQDEYVLLDLDGVSDLIHFPPNAKYVLTGLDTLNPVLIIDDKFKLIGEYEETIGTCLAFTEQDAPVVHEETGPSEVNLFSGARLIDSSQPPTKQVKPVCQLHRVLKFKLSPDSEIQSVTAEETK | 750 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g01079 | 750 | Gene3D | Ribonuclease Inhibitor | 5 | 172 | IPR032675 | - | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 405 | 426 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Gene3D | - | 620 | 730 | - | - | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 382 | 404 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 231 | 252 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Pfam | Leucine rich repeat | 186 | 242 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Pfam | Leucine rich repeat | 254 | 310 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Pfam | Leucine rich repeat | 478 | 534 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Pfam | Leucine rich repeat | 405 | 462 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | Pfam | Leucine rich repeat | 46 | 103 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 136 | 227 | - | - | |
| Cca10g01079 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 453 | 532 | - | - | |
| Cca10g01079 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 522 | 582 | - | - | |
| Cca10g01079 | 750 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 136 | 227 | - | - | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 500 | 522 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | SUPERFAMILY | L domain-like | 41 | 317 | - | - | |
| Cca10g01079 | 750 | SUPERFAMILY | L domain-like | 362 | 559 | - | - | |
| Cca10g01079 | 750 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 212 | 466 | - | - | |
| Cca10g01079 | 750 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 14 | 131 | - | - | |
| Cca10g01079 | 750 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 453 | 532 | - | - | |
| Cca10g01079 | 750 | PANTHER | LEUCINE RICH REPEAT CONTAINING PROTEIN | 522 | 582 | - | - | |
| Cca10g01079 | 750 | PRINTS | Leucine-rich repeat signature | 498 | 511 | - | - | |
| Cca10g01079 | 750 | PRINTS | Leucine-rich repeat signature | 277 | 290 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 90 | 113 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 230 | 251 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 252 | 275 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 276 | 296 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 159 | 182 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 427 | 450 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 206 | 229 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 114 | 136 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 498 | 520 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 381 | 403 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 521 | 544 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 404 | 426 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 475 | 497 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 451 | 474 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 67 | 88 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 297 | 320 | IPR003591 | - | |
| Cca10g01079 | 750 | SMART | LRR_typ_2 | 546 | 568 | IPR003591 | - | |
| Cca10g01079 | 750 | Pfam | TFIIIC subunit triple barrel domain | 626 | 706 | IPR019481 | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 113 | 132 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 521 | 541 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 274 | 294 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 90 | 109 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 67 | 86 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 427 | 446 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 498 | 517 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 380 | 400 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 229 | 248 | - | - | |
| Cca10g01079 | 750 | SMART | LRR_bac_2 | 159 | 178 | - | - | |
| Cca10g01079 | 750 | Gene3D | Ribonuclease Inhibitor | 331 | 467 | IPR032675 | - | |
| Cca10g01079 | 750 | Gene3D | Ribonuclease Inhibitor | 468 | 580 | IPR032675 | - | |
| Cca10g01079 | 750 | Gene3D | Ribonuclease Inhibitor | 272 | 330 | IPR032675 | - | |
| Cca10g01079 | 750 | Gene3D | Ribonuclease Inhibitor | 173 | 271 | IPR032675 | - | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 523 | 544 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 276 | 297 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | ProSiteProfiles | Leucine-rich repeat profile. | 429 | 450 | IPR001611 | GO:0005515 | |
| Cca10g01079 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 212 | 466 | - | - | |
| Cca10g01079 | 750 | PANTHER | LRR RECEPTOR-LIKE KINASE | 14 | 131 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca10g01079 | 74 | 558 | Receptor kinase-like Gene Family | AT4G08850 | 29.002 | 7.82e-23 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca10g01079 | - | - | gmx:100781571 | 999.964 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca10g01079 | 10 | 13558739 | 13579751 | Cca10g01079 | 10 | 13558739 | 13579751 | ECH |