Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca10g01078 | ATGGGAGAGCGTTGTAGACATTTTTCCATCGAGGAATTGCCATCACATTTGGTTTTAGAAATTCTCTGCTCAGGCAGGCTCAGCGCAGTGGACCTTGTTTGTTTTGAATTGACTTCCAAAACTTTTGGTGGTAGTCATGGTTTGTACCCTTTCAAGTTTAAGTCCTTGGTTGACTTTGCTGCATTTCAATTGTGTGCCTCCCATGTTACCTATTCTAGGATGGGTTTGAATTCTCAGAGGGAGTTGTATGATAGATGTGGTGGAAATTGGAAGCGAGTTTTGAGGTTCTTGCAGTCTGTGGAACAATCCTCTCAGATGGTCGAGACATCATCAGGCAATATGCAAATAACAACTGGAAAGTATCACACCTTGTTGATCAGCAATTCTTCTGTCTATTCTTGTGGTTCTCATTTGTGTGGTGTACTTGGTCAAGGGCCTGAAACAACACAATGTGTAGCATTTACTCGGATTAATTTCCCACATTTGGCACGTGTGGTGCACGTTTCAGCCTCCTTTAACCATGCAGCTTTCGTTACGCAATCAGGAGAGGTATTCACGTGTGGAGATAATTCATCTTCTTGCTGTGGGCATAGAGATTCAAACCGACCAATTTTTAAGCCATGCCTTGTTGAAACCCTGAAGGGGATTCCTTGCAAACAGGTTGCAGCGGGGCTAAACTTCACAGTCTTCCTCACCAGACAAGGTCATGTTTATACATGTGGAACCAACACACATGGCCAACTTGGTCATGGTGACACTCAGGACAGACCAACCCCCAAAATGATTGAAGTCCTTAGTAATGTTGACCCTGTTGTTCAGATTGCTGCTGGACCCAGCTACATTTTAACCGTAACAGAAAATGGAACAGTATACTCCTTTGGATCAGGTGCTAATTTCTGTCTTGGCCATGGTGAGCAGCACAATGAGTTTCAACCACGTGCTATACAGAAATTCAGAAGGAAAGGTATTCATATTGTCCGTGTATCTGCTGGGGATGAGCATGCAGTGGCACTTGATTCAAATGGATTTGTATACACATGGGGCAAGGGATACTGTGGTGCTTTAGGCCATGGGGATGAGATTGAGAAAACAACTCCAGAGATGTTAACTAGTCTCAAGAATGAATTGGCTGTTCAGGTCTGTGCAAGAAAGAGGAAAACATTTGTTCTAGTTGATTCTGGTTCAGTATATGGCTTTGGTTCAATGGGATTTGGAAGCCTCGGATTCCTGGATAGAAGGGTATCTGATAAAGTATTGAAACCTCGAATCTTAAATACCTTGAGAGGTCACCATGTTTCTCAAATTAGCACTGGCTTGTACCACACTGTTGTGATCACTAGCAGGGGACAGATATTTGGCTTTGGAGACAATGAAAGAGCACAACTTGGTCATGACACATTAAGAAGCTGCCTTGAACCAACTCAAATTCTCATTGAAGATAATACTTCTGAAGATGTAGAAACCATCTAA | 1470 | 0.4279 | MGERCRHFSIEELPSHLVLEILCSGRLSAVDLVCFELTSKTFGGSHGLYPFKFKSLVDFAAFQLCASHVTYSRMGLNSQRELYDRCGGNWKRVLRFLQSVEQSSQMVETSSGNMQITTGKYHTLLISNSSVYSCGSHLCGVLGQGPETTQCVAFTRINFPHLARVVHVSASFNHAAFVTQSGEVFTCGDNSSSCCGHRDSNRPIFKPCLVETLKGIPCKQVAAGLNFTVFLTRQGHVYTCGTNTHGQLGHGDTQDRPTPKMIEVLSNVDPVVQIAAGPSYILTVTENGTVYSFGSGANFCLGHGEQHNEFQPRAIQKFRRKGIHIVRVSAGDEHAVALDSNGFVYTWGKGYCGALGHGDEIEKTTPEMLTSLKNELAVQVCARKRKTFVLVDSGSVYGFGSMGFGSLGFLDRRVSDKVLKPRILNTLRGHHVSQISTGLYHTVVITSRGQIFGFGDNERAQLGHDTLRSCLEPTQILIEDNTSEDVETI | 489 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca10g01078 | 489 | Gene3D | - | 61 | 288 | IPR009091 | - | |
| Cca10g01078 | 489 | Gene3D | - | 289 | 488 | IPR009091 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 342 | 393 | IPR000408 | - | |
| Cca10g01078 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 328 | 338 | IPR000408 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 394 | 448 | IPR000408 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 288 | 341 | IPR000408 | - | |
| Cca10g01078 | 489 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 9 | 478 | - | - | |
| Cca10g01078 | 489 | SUPERFAMILY | RCC1/BLIP-II | 107 | 411 | IPR009091 | - | |
| Cca10g01078 | 489 | SUPERFAMILY | RCC1/BLIP-II | 378 | 482 | IPR009091 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 182 | 234 | IPR000408 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 235 | 287 | IPR000408 | - | |
| Cca10g01078 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 289 | 305 | IPR000408 | - | |
| Cca10g01078 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 325 | 338 | IPR000408 | - | |
| Cca10g01078 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 344 | 360 | IPR000408 | - | |
| Cca10g01078 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 435 | 451 | IPR000408 | - | |
| Cca10g01078 | 489 | PRINTS | Chromosome condensation regulator RCC1 signature | 451 | 465 | IPR000408 | - | |
| Cca10g01078 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 432 | 460 | - | - | |
| Cca10g01078 | 489 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 435 | 445 | IPR000408 | - | |
| Cca10g01078 | 489 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 449 | 489 | IPR000408 | - | |
| Cca10g01078 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 235 | 279 | IPR000408 | - | |
| Cca10g01078 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 341 | 382 | IPR000408 | - | |
| Cca10g01078 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 181 | 231 | IPR000408 | - | |
| Cca10g01078 | 489 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 287 | 338 | IPR000408 | - | |
| Cca10g01078 | 489 | PANTHER | BNAA01G28890D PROTEIN | 9 | 478 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca10g01078 | Cca-Chr10 | 13535842 | 13540606 | Dispersed/Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca10g01078 | - | - | gmx:100782653 | 913.679 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca10g01078 | 10 | 13535842 | 13540606 | Cca10g01078 | 10 | 13535842 | 13540606 | ECH |