Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01077 ATGGCACTGACCCTTCTCGTGTGCGAGGTATCCGACCTCTGCCTTGGCAAgccgccgctcaggtcgctctccgcctccgccaccgtcgccgacgccttggccgcGCTCAAAGGCTCCGACGAGAGCTTCATCAGCGTCTGGAGCTGCGACCACCGAAACGACGACGTTGGCTATTGCCGATGCGTGGGGAAAGTGTGCATGGTCGATGTTATTTGCTACCTTTGCAAAGAGGACAATCTCTTGTCTCCTTCTTCTGCTCTCAACAAACCCCTTTCTTCTATTCTCCCTAAGGACCCTTCTCTCGTCGTGCATCTCCAACCTTCTTCTAGCTTGTTGGAGGCTATTGATCTGATACTGGAAGGTGCACAGAATCTTGTGGTGCCAATAGTGGCAACAAAGAGGAGTGGAGTTTCAAGAAGGAAACAGCATCAGAGTGGGGTTTCAAATTCAAGCCACAATGGTCGTGAGTTCTGCTGGTTGACTCAAGAGGACGTGATTCGGTTCCTTCTTGGTTCCATTGGCCTCTTCACTCCACTCCCTGCACTCTCCATTGACTCTCTTGGCATCATCACTTCTGATGTTCTGGCCGTTGACTACTACTCCCCTGCATCTTCTGCAGTTGGAGCCATCTCAAAGTCCCTCACTCAACAAACCTCTGTTGCCATTGTGGACACTGATGGGGCCTTCATTGGGGAGATCTCACCCTTCACCCTTGCTTGCTGCGACGAGACTGTCGCCGCCGCGGTCGCCACCCTGTCTGCCGGGGACCTGATGGCCTACATTGACTGTGGTGACCCTCCTGAGGATCTTGTGAGAGTGGTCAAGGCCAGGTTGAAGGAGAGGAATTTGGAGAAAATGTTGCAAGATTTCACCATTTTGTCATGTATGGTGGGTGAGACTTCAGCATCCTCTTCCTCTGATGAGGAGTCTCCAACAAGGACACTGGCTAGGGCTGGAAGGTACACAAGGTCATCTAGCTACTCAGCCAGGATGCTAAGGAAGGCTGAGGCTATAGTTTGCCATCCCAAGAGCTCCCTTGTTGCTGTCATGATCCAGGCCATTGCTCATAGGGTCAACTACTTGTGGGTTATTGAGGATGATTGTAGCTTAGTTGGCATTGTCACATTTTCTAACATGTTGAAGGTGTTCAGAGAACATTTAGAGACTGTGTAG 1173 0.4808 MALTLLVCEVSDLCLGKPPLRSLSASATVADALAALKGSDESFISVWSCDHRNDDVGYCRCVGKVCMVDVICYLCKEDNLLSPSSALNKPLSSILPKDPSLVVHLQPSSSLLEAIDLILEGAQNLVVPIVATKRSGVSRRKQHQSGVSNSSHNGREFCWLTQEDVIRFLLGSIGLFTPLPALSIDSLGIITSDVLAVDYYSPASSAVGAISKSLTQQTSVAIVDTDGAFIGEISPFTLACCDETVAAAVATLSAGDLMAYIDCGDPPEDLVRVVKARLKERNLEKMLQDFTILSCMVGETSASSSSDEESPTRTLARAGRYTRSSSYSARMLRKAEAIVCHPKSSLVAVMIQAIAHRVNYLWVIEDDCSLVGIVTFSNMLKVFREHLETV 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01077 390 Pfam CBS domain 337 382 IPR000644 -
Cca10g01077 390 ProSiteProfiles CBS domain profile. 331 389 IPR000644 -
Cca10g01077 390 Gene3D - 297 385 IPR046342 -
Cca10g01077 390 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 1 389 - -
Cca10g01077 390 SUPERFAMILY CBS-domain pair 179 388 IPR046342 -
Cca10g01077 390 PANTHER CYSTATHIONINE BETA-SYNTHASE (CBS) FAMILY PROTEIN-RELATED 1 389 - -
Cca10g01077 390 SUPERFAMILY CBS-domain pair 9 171 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01077 Cca-Chr10 13529778 13532069 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01077 - - gmx:100783195 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01077 10 13529778 13532069 Cca10g01077 10 13529778 13532069 ECH