Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01075 ATGGCAGATCGCTTCTTTCCGAACGAGATGCCACGCTTTGTGGCAGAGACCACTGACCAAACTCCATCAACAGActctctctctgctcttctctctctccctttccaatccctctctcAAAATTTCCAAGCATCTGCATTTCACTTGAAACAATTGGTGGTGAGGGAGACATGGGGGTCACGTGGGAAGCGTGTGAAGGACTATTCGGTTTACACGGGGGCTCTTGGGACAGCATACCTGCTTTTCAAGGCCTACCAAGTAACCAAGGATGGGAATGATCTTAACTTGTGCTCAGAGATTGTCAAGGCTTGTGATTCTGCTTCAGCGGATTCTAGCAAAGTGACATTTATCTGTGGGCGTGCTGGTGTTTGTGCTCTTGGTGCTGTCATAGCTAAGCATACTGGTGATGAAAGACTACTTGACTATTACCTAAGACAATTTAAAGAGATTGTGATACCTCGTGATTCACCCAATGAGCTATTGTATGGAAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAACAAGCATATTGGTAACAACACAATACCTACTACCCACATGAGATTAGTTGTGGATGAAGTTGTTAAGTCTGGCAGACAATTGGGTCGCAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGTGGTGCTGCTCATGGACTTGCAGGAATCATGCATGTTTTGATGGACATGGAACTCAAGCCAGATGAGGCTGAAGATGTCAAGGGTATGCTACGTTACATGATTAAGAATCGTTTCCCTAGTGGAAATTATCCCTCCAGTGAAGGAAGTGAAAATGACCGTCTTGTGCATTGGTGTCATGGTGCTCCTGGAGTCACTCTTACCCTTGTAAAGGCAGCTGAGGTATTTGGGGAGAAGGAGTTTTTACAAGCAGCTGTAGATGCAGGGGAAGTAGTATGGAAGAGGGGTTTGCTTAAGAAAGTTGGGATGTGTCATGGCATCAGTGGGAACACCTATGTATTTCTTTCTCTTTACAGATTGACAGGAAATGAGGAGTACCTGTACAGAGCCAAAGCATTTGCTTGTTTTCTACTTGATAGGGCACAAAATCTGATCTCAGAAGGAAAGATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATACTTGTCTAGACATGGTTGATCCACAAATGGCCAAGTTCCCAGGCTATGAACTGTGA 1218 0.4294 MADRFFPNEMPRFVAETTDQTPSTDSLSALLSLPFQSLSQNFQASAFHLKQLVVRETWGSRGKRVKDYSVYTGALGTAYLLFKAYQVTKDGNDLNLCSEIVKACDSASADSSKVTFICGRAGVCALGAVIAKHTGDERLLDYYLRQFKEIVIPRDSPNELLYGRAGYLWACSFLNKHIGNNTIPTTHMRLVVDEVVKSGRQLGRKGRCPLMYEWHGKKYCGAAHGLAGIMHVLMDMELKPDEAEDVKGMLRYMIKNRFPSGNYPSSEGSENDRLVHWCHGAPGVTLTLVKAAEVFGEKEFLQAAVDAGEVVWKRGLLKKVGMCHGISGNTYVFLSLYRLTGNEEYLYRAKAFACFLLDRAQNLISEGKMHGGDRPYSLFEGLGGMAYTCLDMVDPQMAKFPGYEL 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 67 85 IPR007822 -
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 158 173 IPR007822 -
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 219 235 IPR007822 -
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 274 294 IPR007822 -
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 320 333 IPR007822 -
Cca10g01075 405 PRINTS LanC-like protein superfamily signature 375 392 IPR007822 -
Cca10g01075 405 PANTHER LANC-LIKE PROTEIN 1 405 - -
Cca10g01075 405 CDD euk_LANCL 70 401 - -
Cca10g01075 405 SUPERFAMILY LanC-like 64 405 - -
Cca10g01075 405 PANTHER LANC-LIKE PROTEIN GCL2 1 405 - -
Cca10g01075 405 SMART LANC_like_2 64 405 IPR007822 -
Cca10g01075 405 Pfam Lanthionine synthetase C-like protein 65 405 IPR007822 -
Cca10g01075 405 Gene3D - 1 405 IPR012341 GO:0005975
Cca10g01075 405 PRINTS Eukaryotic LanC-like protein family signature 2 15 IPR020464 -
Cca10g01075 405 PRINTS Eukaryotic LanC-like protein family signature 208 220 IPR020464 -
Cca10g01075 405 PRINTS Eukaryotic LanC-like protein family signature 254 269 IPR020464 -
Cca10g01075 405 PRINTS Eukaryotic LanC-like protein family signature 291 312 IPR020464 -
Cca10g01075 405 PRINTS Eukaryotic LanC-like protein family signature 336 354 IPR020464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01075 Cca-Chr10 13473216 13476135 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01075 - - gmx:100786158 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01075 10 13473216 13476135 Cca10g01075 10 13473216 13476135 ECH