Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01074 ATGGCTCTCCAAGCTGCTTCTTTGGTTCCTGCTTCTTTCTCCCTTCCTAAAGAGGGAAAGAATGGTGTGTCTCTCAAGGACTCCGCTCTGTTCGGTCTTTCATTGTCAGAACCTATCAAAGCTGACTTCAGCTCTTCTGCATTGAGGTGCAAGAGGGACTTACAACAAAAAATTGGTGCTGTGAGGGCCGAGACAGTGGCTACAACCACTCCAGCAGTTACCAAATCTACACCAGAAGGCAAGAAAACATTGAGAAAGGGCAGTGTTGTGATAACTGGGGCTTCCTCTGGATTAGGCCTTGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATATAATAATGGCCTGCAGGGATTTCCTCAAAGCTTCAAGAGCTGCAAAATCTGCTGGCATGGCCAAGGAAAACTACACCATCATGCACTTGGACCTCGCCTCTCTCGACAGCGTCCGCCAATTCGTTGATAACTTCAGAAGATCAGACATGCCGCTGGATGTGCTGGTCTGCAATGCTGCTGTTTACTTGCCAACTGCCAAGGAACCTACATTCACTGCTGAAGGCTTTGAACTTAGTGTTGGGACAAACCATCTGGGGCATTTTCTCCTTGCCCGTTTGTTGCTTGAGGACTTGAACAAATCTGATTACCCTTCAAAGCGCTTGATCATTGTTGGTTCAATCACAGGGAACACAAACACATTGGCTGGTAATGTACCTCCCAAAGCTAACCTTGGTGACTTGAGGGGACTTCAGGGTGGTTTGAATGGGCTAAACAGTTCAGCCATGATTGATGGTGGAGACTTTGATGGTGCCAAGGCATACAAGGACAGCAAAGTCTGTAATATGCTCACAATGCAAGAATTCCACAGAAGATTCCACGAGGAAACTGGAATCACATTCGCTTCGCTATACCCCGGATGCATTGCCACAACAGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGAACTCTATTCCCTCCATTCCAAAAGTACATAACCAAAGGCTTTGTCTCAGAAGATGAAGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAACAAAACATCTGCTTCATTTGAAAACCAGTTGTCACAGGAGGCTAGTGATGCAGAGAAGGCTCGTAAGGTGTGGGAGATTAGTGAGAAACTCGTTGGTTTGGCCTAA 1200 0.4683 MALQAASLVPASFSLPKEGKNGVSLKDSALFGLSLSEPIKADFSSSALRCKRDLQQKIGAVRAETVATTTPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHIIMACRDFLKASRAAKSAGMAKENYTIMHLDLASLDSVRQFVDNFRRSDMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLQGGLNGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRFHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGFVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKTSASFENQLSQEASDAEKARKVWEISEKLVGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01074 399 Gene3D - 73 399 - -
Cca10g01074 399 PANTHER - 1 398 IPR005979 GO:0016630
Cca10g01074 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Cca10g01074 399 CDD LPOR_like_SDR_c_like 86 398 - -
Cca10g01074 399 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 398 - -
Cca10g01074 399 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 85 399 IPR005979 GO:0016630
Cca10g01074 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 366 IPR036291 -
Cca10g01074 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Cca10g01074 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Cca10g01074 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01074 Cca-Chr10 13469704 13472775 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01074 K00218 - gmx:100785637 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01074 10 13469704 13472775 Cca10g01074 10 13469704 13472775 ECH