Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01070 ATGCAACGTAACATGGCAATGAGATTCTTCAGCCAGCAAAGGCGAACACAAATGTTGGCAAGGCGAGTGGTGGAGCCTTGTGACGTGTTCCTGAACCACAGGTGCATGGACACGAAGAAAACGGTGGCGACGTTGCTCTATGACCATCTGAAGAGACACGGTTTCAACCCTTTCTTGGACAACAAGAACATGAAGCCAGGGGACAAACTGTTTGAGAAAATCAACAGGGCTGTTATGGAGTGCAAGATTGGCGTGGCGGTTCTGTCTCCACGCTACACTGAATCCTACTTTTGCCTCCACGAGCTCGCACTTCTTCTCGGGTGCAACAAGAAGGTCATTCCCATCTTCTGCGACGTCAAGCCCTCTCAGTTGCGTGTTGTCAACAACCCTAAGTGGTCAGAAGACGAGTTTCGTCGCTTCAGATGGGCTCTTGAGGAGGTTAAGTACACCGTTGGACTCACCTTCAATTCCTCTAAAGGGAACTTGTCCGAAATTGTGAACAGTTCTTCCGACATCATCGTTGGCAGCATGATAGAGCTTGAGAATGAAGAGAGGATGGTGCAAAAGAAGTTACCAATTCCTCTTTAG 588 0.4864 MQRNMAMRFFSQQRRTQMLARRVVEPCDVFLNHRCMDTKKTVATLLYDHLKRHGFNPFLDNKNMKPGDKLFEKINRAVMECKIGVAVLSPRYTESYFCLHELALLLGCNKKVIPIFCDVKPSQLRVVNNPKWSEDEFRRFRWALEEVKYTVGLTFNSSKGNLSEIVNSSSDIIVGSMIELENEERMVQKKLPIPL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01070 195 PANTHER COP1-INTERACTING PROTEIN-RELATED 20 189 - -
Cca10g01070 195 Pfam TIR domain 28 125 IPR000157 GO:0007165
Cca10g01070 195 SUPERFAMILY Toll/Interleukin receptor TIR domain 27 151 IPR035897 -
Cca10g01070 195 ProSiteProfiles TIR domain profile. 25 151 IPR000157 GO:0007165
Cca10g01070 195 SMART till_3 26 159 IPR000157 GO:0007165
Cca10g01070 195 Gene3D - 24 177 IPR035897 -
Cca10g01070 195 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 20 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01070 Cca-Chr10 13346670 13347608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01070 29 156 Miscellaneous Gene Families AT1G57670 34.028 3.05e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01070 - - ccaj:109788850 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01070 10 13346670 13347608 Cca10g01070 10 13346670 13347608 ECH