Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01062 ATGGCCAACTTCCTCGCTCAGTTCCAGACAATTAAGAACACCTCCGATCGCCTCGTCATTTCAGTGGAGGATGTGAGTGACATTTGGCCAACTGTCAAGCCTGCATTTGAGGCGCGTTTGCCGTTCAAAAGAGCGACTTTGAATAACAAGACGCGGAACCCTGTCTTTGTTGAGGCATTGCCTGCTGAGTTTATATTAACTACAGATTCAAGACTCCGTAGCCGGTTCCCTCACGAGCAGTTTTTGTTTTGGTTCCGGGAGCCGTATGCCAATATTGTACTTGTCACCTGTGAGGATCTGGATGAGTTCAAAACCATCCTTAAACCACGCTTGAAATTGATTGTCCAAAATGATGAAAGGGAGTGGTTTGTTGTATTTGTATCTAAAGCTCATCCAGCTAATGATCAAGCAAGCAAAATGGCGAAGAAAGTATATGCTAAACTTGAAGTTGAGTTTAACACCAAAAAAAGAGAAAGATGCTGCAAATATGATATGCATCTCCCTGAAGCAAACTTTTGGGAGGATCTAGAATCAAAGATAATGGAATGCATCAGAAATACCCTGGATAGGCGTGTACAATTCTATGAGGATGAGATACGAAAGCTCAGTGAACAGCGACTCATGCCAGTCTGGAACTTCTGCAATTTTTTTATTCTTAAGGAAAGCTTGGCTTTTATGTTTGAAATGGCTCACCTTCATGAAGATGCCTTACGGGAATATGACGAACTAGAACTCTGCTATCTTGAAACAGTTAACGTGACTGGAAAGCAGAGAGACTTTGGAGGGGCAGATCATGGTGACGACCAGGCAGCATTGGTTAATCCAGGAAATAAAGCATTGACACAGATTGTTCAAGAGGACTCATTTAGGGAATTTGAATTCAGACAGTATCTATTTGCCTGTCAATCAAAGCTCTTATTCAAGCTCAATCGTCCCATCGAGGCTGCATCACGAGGCTATTCATTCATAATAAGCTTCTCAAAATCGTTGGCATTGCATGAGCGTATACTGCCTTTTTGTATGCGTGAAGTCTGGGTAACAACTGCTTGTTTGGCCTTAATTGAAGCAACCACTTCTAATTATAAAGATGAACTTGTGGCACCTGACATAGAGAAGGAGTTTTTTCGTCTTCTGGGTGACCTGTATTCTCTAGCTAGAGTTAAGTTCATGAGGCTTGCCTATTTAATTGGGTATGGAACTGATATAGAAAGAAGTCCTGTCAACAGTGCTTCCCTCAGCTTGCTACCTTGGCCTAAGCCAGCTGTATGGCCTACAGTTCCTGCCGACGCTTCAACAGAGGTGCTTGAGAAAGAAAAGCTGATTCTCCAAACAACTTCTAGAACCAAGTCCTTTGGTATCCAGAGGAAACCTCTGCCTCTGGAACCTACTGTTCTTCTACGAGAGGCCAACAGGCGGAGGGCTTCACTTTCAGCTGGAAATATGTCTGAAATGTTTGACAGTCGCCAGGGTCCAATGGAAGGATCAGGTTTCGACTCATCCACAAGAATGTCACCACCGCGTAAAGCACTTGCAAGTTCTTCCATGTCACGTACAAATTCTTCACCAGGAAACTTCGAGGGTTCAATTGACCGACCGATGAGGCTTGCTGAAATTTTTATTGCTGCTGAGCATGCTTTGAAGCAAACAATTTCCAATCCAGAACTGTGGAAGTCATTATCATCATCTGAGGAGTTTGAGCAAAAATATTTAGATTTAACTAAAGGTGCTGCTGATAATTACCATCGTTCCTGGTGGAAAAGACATGGTGTTGTCCTTGATGGTGAGATAGCAGCTGTTGCTTTTAAGCATGGACATTTTGATCAAGCTGCAAAGTCATATGAGAAGGTTTGTGCTCTGTATGCTGGTGAAGGATGGCAGGATTTGTTGGCTGAGGTCCTTCCCAATTTAGCCGAGTGTCAGAAGATACTTAATGATCAAGCTGGCTACTTATTATCTTGTGTGAGGTTACTTTCTCTTGATGAAGGGTTATTTTTGACCAAGGAGCGTCAAGCCTTTCAGTCAGAAGTTGTTCGCCTTGCTCATAGTGAAATGAAGGACCCTGTACCTCTTGATGTATCATCATTAATTACATTTTCTGGAAATCCTGGGCCTCCATTGGCGTTATGTGATAAGGATCCCGGTATCCTTTCTGTAACTTTATGGAGTGGCTTTCCTGATGATATTACTCTTGATTCAATCAGTCTTACATTAAACGCAACATATAATACTGATGAAGGTGTAAAGGCATTGAAGAGTTCTACTGCTATTGTGTTACACCCTGGTCGAAATACTATTACCTTGGATCTACCACCTCAGAAACCGGGATCTTATGTTCTTGGGGTTCTTACTGGGCAAATTGGGCCGTTGAGGTTTAGATCTCATAGTTTTTCAAAAGTTGGTCCTGCAGATAGTGATGATTTTATGAGTTATGAAAAGCCAGCTAAACCCATTCTAAAGGTTTTCAAACCTAGAGCCCTTGTTGATCTTGATGCTGCTGTTTCATCTGCTTTGTTGATAAATGAAGACCAATGGGTTGGCATTTTAGTTCGGCCAGTAAATTACTCTCTCAAAGCTGCTGTATTGCATATTGATACTGGTCCAGGGTTGGAGATTAAAGAGTCACACGTAATTGAGATGGAAAGCTCTGCTGGTGTATCAGAGAATGATGGTGATCAGGTGCAGAATGATGATGCCCAAATAAGAACTCTAAATTCTGATAAAAAATTTGAACGTTTGATTCTCCGTGATGGTAAAATAGAATTTCCAAATTGGGCAAGTGAAATTCCTTCTATTCTTTGGGTTCTGGTTCGTGCCATCAGTGACACACTCAGCAGAGGATCATCTTCAGCCACAACAAGGAGAGAGAGTATTGTAGATGGAATGAGAACAATAGCTCTGAAACTTGAATTTGGAGCATTCCACAATCAGATATTTGAAAGGACCCTAGCAGTGCATTTTACATATCCTTTCTATGTGAGGACACGTGTTACTGATAAATGCAATGATGGTACCCTGCTTCTGCAGGTGATACTTCACTCTGAAGTAAAGGCTACACTGACCATTTATGATGCTTGGCTTGATCTTCAAGATGGATTTGTTCATACTGGACAAACTGAGGGTAGACCTAATTCAAGTTTCTTCCCACTAATCAtatctccctcttccaaagcagggattttgtttagcatctgcctagacaagacAAATCTGGAAGAAGCCAGGGAGCAACCAGAAAGCATATTAAATATCAAATATGGAATTTCTGGTGATAGAACAATTGGAGCCCACCCTCCTGTCATGAATGAATCTGCTGGAGTTGATGGTGCCAGACAGGAGTTAATCTTCAGGAGTGCAATTACTTTGCAAAGGCCTGTGCTTGATCCATGCCTAGCTGTTGGTTTTCTTCCTCTCCCTTCAGATGGTCTAAGAGTTGGACAACTAATTAAGATGCAATGGAGAGTGGAAAGGTTAAAGGATTTGGATGAGGCAGGAGTTTCTAAACAGAATGATGAGGTACTATACGAGGTAAATGCAAATTCTGGAAATTGGATGATAGCCGGGAGGAAAAGAGGATATGCATCTCTGTCCCCAAAACAAGGCGCAAGAATAATTATCTCAGTATTATGCATGCCACTGGTGGCTGGTTATGTTCGCCCTCCCTTACTTGGGCTTCCAGATGTTGATGAGGCAAATATAAGCTGCAAACCTGCTGGGCCACATCTGGTTTGTGTTTTGCCACCTCCTCTCAGTTCGTCCTTCTGCATTCCAGTTAATTCATGA 3780 0.4161 MANFLAQFQTIKNTSDRLVISVEDVSDIWPTVKPAFEARLPFKRATLNNKTRNPVFVEALPAEFILTTDSRLRSRFPHEQFLFWFREPYANIVLVTCEDLDEFKTILKPRLKLIVQNDEREWFVVFVSKAHPANDQASKMAKKVYAKLEVEFNTKKRERCCKYDMHLPEANFWEDLESKIMECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFILKESLAFMFEMAHLHEDALREYDELELCYLETVNVTGKQRDFGGADHGDDQAALVNPGNKALTQIVQEDSFREFEFRQYLFACQSKLLFKLNRPIEAASRGYSFIISFSKSLALHERILPFCMREVWVTTACLALIEATTSNYKDELVAPDIEKEFFRLLGDLYSLARVKFMRLAYLIGYGTDIERSPVNSASLSLLPWPKPAVWPTVPADASTEVLEKEKLILQTTSRTKSFGIQRKPLPLEPTVLLREANRRRASLSAGNMSEMFDSRQGPMEGSGFDSSTRMSPPRKALASSSMSRTNSSPGNFEGSIDRPMRLAEIFIAAEHALKQTISNPELWKSLSSSEEFEQKYLDLTKGAADNYHRSWWKRHGVVLDGEIAAVAFKHGHFDQAAKSYEKVCALYAGEGWQDLLAEVLPNLAECQKILNDQAGYLLSCVRLLSLDEGLFLTKERQAFQSEVVRLAHSEMKDPVPLDVSSLITFSGNPGPPLALCDKDPGILSVTLWSGFPDDITLDSISLTLNATYNTDEGVKALKSSTAIVLHPGRNTITLDLPPQKPGSYVLGVLTGQIGPLRFRSHSFSKVGPADSDDFMSYEKPAKPILKVFKPRALVDLDAAVSSALLINEDQWVGILVRPVNYSLKAAVLHIDTGPGLEIKESHVIEMESSAGVSENDGDQVQNDDAQIRTLNSDKKFERLILRDGKIEFPNWASEIPSILWVLVRAISDTLSRGSSSATTRRESIVDGMRTIALKLEFGAFHNQIFERTLAVHFTYPFYVRTRVTDKCNDGTLLLQVILHSEVKATLTIYDAWLDLQDGFVHTGQTEGRPNSSFFPLIISPSSKAGILFSICLDKTNLEEAREQPESILNIKYGISGDRTIGAHPPVMNESAGVDGARQELIFRSAITLQRPVLDPCLAVGFLPLPSDGLRVGQLIKMQWRVERLKDLDEAGVSKQNDEVLYEVNANSGNWMIAGRKRGYASLSPKQGARIIISVLCMPLVAGYVRPPLLGLPDVDEANISCKPAGPHLVCVLPPPLSSSFCIPVNS 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01062 1259 MobiDBLite consensus disorder prediction 493 526 - -
Cca10g01062 1259 Coils Coil 185 205 - -
Cca10g01062 1259 MobiDBLite consensus disorder prediction 477 527 - -
Cca10g01062 1259 PANTHER BNAC09G30770D PROTEIN 1 1257 - -
Cca10g01062 1259 Pfam Trafficking protein particle complex subunit 10, TRAPPC10 1141 1218 IPR022233 -
Cca10g01062 1259 PANTHER EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1 1 1257 IPR045126 GO:0048193|GO:1990071
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01062 K20307 - gmx:100787264 2376.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01062 10 13127332 13141625 Cca10g01062 10 13127332 13141625 ECH