Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01053 ATGGGTTTTGTTTCTGCGAAAGTGATTCTCATCTCCACCGGGGTTTTATCGATGGCAATGGGATTCAAACTCACACTCCCTTTCATATCGCATTTCCTCCTCACCCAAGCCCCGCACGTGTGGACCTTCTTCCTCACGTGCTTCACTCCTCCCTACCTCTACATCCTCCTCAATTTCATCATCCTCACCATCGTCGCCACTTCCAAACTCCACAACCACTCCCCGCCGGAAGACACCGTCCTCCCCCCCTCCGCCGTCCAGATCCCCGCTCCTGACACCGTCGACTTCTCCGCCGTCGCATCTGACAATTACCTTTACGAAACGGAAACCAAATCGAGCCACGATGCAGTCGCGGAAGCCAACGGTTCCGTCGGTTACGTTTACGACGAGAACACGCCGGTGAAGGCGACGGTTAACGACGACGACGATGCCGTCTCTCCGAGCTTGCAGAGGAAAGATTCGTTTGCAGACGAGAACGAGAAACCGCCGGTTTCTGCCAGATTCAATCACCGGAAAGCCGTGAGAGCAAGTCCCGAAGGAGGGAAGGTGGTGGCGTTGGGAGTGGCGAAGGCGAAGAAGCAGGAGACGTTGGAGAGCACGTGGAGGACGATAACGGAGGGGAGAGCGATGCCGTTAACTCGGCATTTGAAGAAGGCGGAGACGTGGGAGACGCAGGGGACGCCGTTAAGGGATTTGAACGGCGGAGCGGTGATGAAGAAGTCGGAGACGTTTGCGGGGAGGGAGAAGAACGCGTCGACGAGGCTGAGGAAGGAGCCGTCGCTGAGTCAGGACGAGTTGAACCGCCGAGTGGAAGCGTTCATCAACAAGTTCAACGCCGAAATGAGGCTGCAGAGGCAGGAATCGCTCAGACAGTACAGGGAGATGATGAATCGAGGAACTCACTGA 906 0.564 MGFVSAKVILISTGVLSMAMGFKLTLPFISHFLLTQAPHVWTFFLTCFTPPYLYILLNFIILTIVATSKLHNHSPPEDTVLPPSAVQIPAPDTVDFSAVASDNYLYETETKSSHDAVAEANGSVGYVYDENTPVKATVNDDDDAVSPSLQRKDSFADENEKPPVSARFNHRKAVRASPEGGKVVALGVAKAKKQETLESTWRTITEGRAMPLTRHLKKAETWETQGTPLRDLNGGAVMKKSETFAGREKNASTRLRKEPSLSQDELNRRVEAFINKFNAEMRLQRQESLRQYREMMNRGTH 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01053 301 Pfam Cotton fibre expressed protein 263 298 IPR008480 -
Cca10g01053 301 Coils Coil 278 298 - -
Cca10g01053 301 PANTHER COTTON FIBER (DUF761) 3 299 - -
Cca10g01053 301 PANTHER DUF761 DOMAIN PROTEIN 3 299 - -
Cca10g01053 301 MobiDBLite consensus disorder prediction 136 171 - -
Cca10g01053 301 Pfam Domain of unknown function (DUF4408) 38 70 IPR025520 -
Cca10g01053 301 MobiDBLite consensus disorder prediction 145 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01053 Cca-Chr10 12980587 12983608 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01053 - - ccaj:109806133 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01053 10 12980587 12983608 Cca10g01053 10 12980587 12983608 ECH