Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01027 ATGGCTGTCAAAGtttatattgtGTACTACTCCATGTATGGGCATGTTGAGAAACTTGCAGAAGAAATAAAGAAAGGGGCTTCTTCTGTGGAAGGTGTTGAGGCCAAATTATGGCAGGTACCCGAGACACTTCCTGAGGAGGTTCTTGGTAAGATGAGTGCACCACCCAAGAGTGATGTACCATTCATTACCCCCAATGAACTCTCTGAAGCTGACGGCTTTGTTTTCGGCTTCCCAACGAGATTTGGAATGATGGCTGCTCAGTTTAAAGCCTTTCTAGATGCTACTGGAGGTTTATGGAGAACACAACAGCTTGCTGGCAAGCCTGCTGGACTCTTCTACAGTACCGGTTCACAAGGTGGTGGACAAGAGACTACAGCGCTCACTGCTATAACTCAACTGGTTCATCATGGAATGATATTCGTTCCAATTGGATACACGTTCGGTGCGGGCATGTTTGAGATGGAGAAAGTTAAAGGTGGAAGTCCATATGGAGCCGGAACTTACGCAGGTGACGGCTCAAGACAGCCAAGTGAGCTTGAGTTGGAGCAAGCATTCCACCAAGGGAAGTACATTGCCACCATCACAAAGAAGCTCAAGCTAGCTGCATAA 612 0.4673 MAVKVYIVYYSMYGHVEKLAEEIKKGASSVEGVEAKLWQVPETLPEEVLGKMSAPPKSDVPFITPNELSEADGFVFGFPTRFGMMAAQFKAFLDATGGLWRTQQLAGKPAGLFYSTGSQGGGQETTALTAITQLVHHGMIFVPIGYTFGAGMFEMEKVKGGSPYGAGTYAGDGSRQPSELELEQAFHQGKYIATITKKLKLAA 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01027 203 Gene3D - 1 200 IPR029039 -
Cca10g01027 203 PANTHER FLAVODOXIN-RELATED PROTEIN WRBA-RELATED 5 202 - -
Cca10g01027 203 TIGRFAM flav_wrbA: NAD(P)H:quinone oxidoreductase, type IV 3 199 IPR010089 GO:0003955|GO:0010181
Cca10g01027 203 PANTHER FLAVOPROTEIN WRBA, FLAVOPROTEIN-LIKE DOMAIN PROTEIN-RELATED 5 202 - -
Cca10g01027 203 Pfam NADPH-dependent FMN reductase 17 144 IPR005025 GO:0016491
Cca10g01027 203 SUPERFAMILY Flavoproteins 4 200 IPR029039 -
Cca10g01027 203 ProSiteProfiles Flavodoxin-like domain profile. 5 192 IPR008254 GO:0010181
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01027 Cca-Chr10 12542843 12547543 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01027 K03809 - gmx:100305601 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01027 10 12542843 12547543 Cca10g01027 10 12542843 12547543 ECH