Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01023 ATGCCCGAGGCTCCCAGAGACGACGGCTACGAACTGGCAGAGAAGAACAAGAAGATTCTGGACTTCATAGAGGACGTGACTGCGAACGCAGACCAAGTCCAGCAGAACGTGCTTGGTGAAATTCTGTCCCGCAATGCAAACGTTGAATACCTGCGACGACACCGTCTCAATGGCCAAACGGACCGTGACACGTTCAAGAAGCTTCTTCCGGTCATCACCTACGAGGATGTCCAACCTGACATTAACCGCATCGCCAATGGTGACACCTCCCCAATCCTAACCTCCAAACCCATCACTGAATTTCTCACCAGCTCTGGTACATCAGGTGGTGAGAGAAAGCTGATGCCAACAATCGAAGAGGAGCTAGGGAGGCGATGTTTTCTGTATAGCCTATTGATGCCAATAATGAGCCAGTTCGTGGGAGACCTAGAAAAGGGCAAAGGAATGTACCTATTGTTCACAAAATCCGAGTCCAAAACCCCCGCAGGGATCGTGGCACGCCCCGTCCTCACAAGCTACTACAAGAGCCCTTACTTTAGGGACAGACCCTTCGACCCATACACAAACTACACAAGCCCAAACGACACCGTTCTCTGCCCCGACTCCTACCAAAGCATGTACTCCCAGCTCCTCTGCGGCCTCATCCAAAACCAACACGTGTTCCGCGTGGGAGCCATCTTCGCCTCGGGATTCATCCGCGCCATCCGCTTCCTGGAGAAACACTGGACCCTACTCTGCCACGACATCCGAACGGGCACCCTTGACCCTCTGATCACGGACCCTCCCGTGCGAGAGGCTGTCATGAGGATCCTGAAGGCTGATCCGGCGCTGGCGGAGTTGGTCCACAGGGAGTGCAGCAAGGGGTGCTGGCAGGGGATCATTACCCGCCTCTGGCCCAATACCAAGTATGTGGACGTTATTGTGACGGGGACTATGGCACAGTACATTCCCACTTTGGATTACTATAGCAATGGCCTCCCACTTGTGTGCACCATGTACGCTTCTAGTGAGTGTTACTTTGGTGTCAACCTCAACCCCCTTTGCAAACCCGCACATGTCTCTTACACGCTCATCCCCACCATGTGCTACTACGAGTTCTTACCCGTCAACCGCTCCGACCACCTCGCTCCCACTTCGCTCAATCACTCCCAACAACAACAATTGCTCGACCTTGTTGATGTCAAACTCGGCCACGAGTATGAGCTCGTTGTTACAACTCATGCTGGACTCTACAGGTACAGAGTGGGAGACATACTGAGGGTGTCAGGGTTCAAGAACAAGGCCCCTCAGTTCAGCTTCGTTTGCAGGAAGAACGTTGTCCTGAGCATAGACTCCGACAAGACGGACGAGGTGGAGCTTCAGAACGCAATGAAGAACGCTGTGACACACTTGGTGCCCTTCGATGCACACGTGGCGGAATACACAAGCTACGCAGACACCACAACGATCCCGGGGCACTACGTGTTATACTGGGAGCTAAACTTGAAAGGGTCAACTCCTATTCCACCCTGCGTGTACGAGGATTGTTGCCTAACCCTCGAGGAGTCACTCAACAGCGTCTATCGCCAAGGACGCGTGTCCGACAAATCAATAGGACCCCTTGAGATCAAGATTGTGGAACATGGAACCTTTGACAAACTCATGGACTATGCCATTAGCTTAGGTGCTTCGATTAACCAGTACAAGGCACCAAGGTGTGTCAAGTTTGCTCCCATTGTGGAATTGCTGAACTCCAGGGTAACGTCCAACTATTTCAGTCCAAAGTGTCCTAAGTGGGTTCCGGGACACAAACAGTGGATCCATCAGAGTTGA 1812 0.5259 MPEAPRDDGYELAEKNKKILDFIEDVTANADQVQQNVLGEILSRNANVEYLRRHRLNGQTDRDTFKKLLPVITYEDVQPDINRIANGDTSPILTSKPITEFLTSSGTSGGERKLMPTIEEELGRRCFLYSLLMPIMSQFVGDLEKGKGMYLLFTKSESKTPAGIVARPVLTSYYKSPYFRDRPFDPYTNYTSPNDTVLCPDSYQSMYSQLLCGLIQNQHVFRVGAIFASGFIRAIRFLEKHWTLLCHDIRTGTLDPLITDPPVREAVMRILKADPALAELVHRECSKGCWQGIITRLWPNTKYVDVIVTGTMAQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPAHVSYTLIPTMCYYEFLPVNRSDHLAPTSLNHSQQQQLLDLVDVKLGHEYELVVTTHAGLYRYRVGDILRVSGFKNKAPQFSFVCRKNVVLSIDSDKTDEVELQNAMKNAVTHLVPFDAHVAEYTSYADTTTIPGHYVLYWELNLKGSTPIPPCVYEDCCLTLEESLNSVYRQGRVSDKSIGPLEIKIVEHGTFDKLMDYAISLGASINQYKAPRCVKFAPIVELLNSRVTSNYFSPKCPKWVPGHKQWIHQS 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01023 603 Pfam GH3 auxin-responsive promoter 23 568 IPR004993 -
Cca10g01023 603 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 8 600 IPR004993 -
Cca10g01023 603 PANTHER - 8 600 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01023 Cca-Chr10 12429286 12432015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01023 11 586 EF-hand Containing Proteins AT1G23160 50.256 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01023 K14487 - gmx:100797120 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01023 10 12429286 12432015 Cca10g01023 10 12429286 12432015 ECH