Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01016 ATGTGGTTTAGCGGGTTGTTTTGTTTGATGGGGAGTATGATGGGAAACGTAGGAGTGTGGAAGTTGATGAAAATGGTGTGTAGTGTTTTGGGGTTATTTGGAATGGCTGGGACTTCAAATTTGTTGTATGTTTACACGTCGGAGTTGTTCCCTACGGTGGTGAGGAACGTGGCGTTAGGGTGTACGACACAGACGGCGGAAATAGGAGCCATGTTGGCACCGTTTATTGTCGTTTTGGGAGGGTGGTTGCCGTTTGCGGTGTTTGCGTTGTGTGGGATGGTGGGAGGAGTGTTTGCTGTGTTTCTTCCAGAGACTTTAAACCAACCCCTCTATGATACATTTGATGGATTGGAAGCTGGACTTGCATGA 369 0.4743 MWFSGLFCLMGSMMGNVGVWKLMKMVCSVLGLFGMAGTSNLLYVYTSELFPTVVRNVALGCTTQTAEIGAMLAPFIVVLGGWLPFAVFALCGMVGGVFAVFLPETLNQPLYDTFDGLEAGLA 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01016 122 PANTHER ORGANIC CATION/CARNITINE TRANSPORTER 4 1 120 - -
Cca10g01016 122 Gene3D MFS general substrate transporter like domains 1 114 IPR036259 -
Cca10g01016 122 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 120 - -
Cca10g01016 122 SUPERFAMILY MFS general substrate transporter 4 110 IPR036259 -
Cca10g01016 122 Pfam Sugar (and other) transporter 13 111 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca10g01016 122 ProSiteProfiles Major facilitator superfamily (MFS) profile. 1 107 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01016 Cca-Chr10 12329068 12329436 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01016 1 118 Organic Solute Cotransporters AT3G20660 63.559 2.46e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01016 K08202 - gmx:100818415 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01016 10 12329068 12329436 Cca10g01016 10 12329068 12329436 ECH