Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01012 ATGCACCAAGAAGTCGATGACATTATGAACCAGCAAGCTCAAATCCTAAAAGAGGAGGTGAAAATGATGTTTCAATCATCAAATCCAAATATCATGCAAAAATTAAATTTCATTGACTCCATCCAACGTTTTGGTATATCCTACCATTTCCAAAAGGAAATTAATCAAGCATTGGAACAAATTCACAATACCTTGACCAAAGATAACACTATCATAAGTGAAGATGGAAATCATCACTTTCTTGCTCTACTCTTTCAATTACTTAGGCAACAAGGATATCAAATTTCATCAAATGTGTTTAACAAATTCAAAAATGAGCAAGGAAATTTCAATGAAACACTTGCCAACAATATTCAAGGGTTGTGTAGTTTGTATGAAGCTGCACATCTAAGAATCGATGGGGATGATGTATTGGAAGAAGCATATGACTTCTCAAATACTCAACTTATGTCCTTGGCAAACCAATTGAGTCCATCTCTTGCTGCACAAATCAATCACTACTTAAGGCAACCACTTAACAAGAGTGTACTTAGGTTTGAGGCAAGGTATCACATGACTGTCTATGAACAAGATTCTTCCCATAATGAAATCTTACTAACCTTTGCGAAAGTAGATTTCAATATTCTTCAAAAAATGCATCAAAAAGAAATTGGCATTATCACCAAGTGGTGGAAACAATCAAATGTTATGAAAAAGGTTCCTCACGCTAGAGATAGATTGGTTGAGTGCTATCTTTGGATCTTAGCCATGTCCTACAAGCCCGAAGATAGCAACGGAAGAATGTTTGCGGGAAAATTGAGCACTGTTATCACTCTTTTAGATGATGCTTATGATGCTTATGGCACTGTTGAAGAACTTGAACTCTTGACTGAAGCATTTAAGAGATGGGATATTGGTCTCATTGGATCTCTTCCACTAAGCATGAAAGTAATATTTGATACAATAGTAGAACTCTCTAAAGAAATGGAGTTGTTAACTGCTCATACTGGAAAATCAAGCCTTGCAGTGCAACATTTTAAACAAGCAATTTGTAACCTAGCAAAAGCCTACATGGTTGAAGCAAAATGGTGCCACAAGGGTTACATTCCAACATATGATGAATATAAAGCTAATGGAATCTTAACATCTTGTTGTCCTCTATTGTTCACATCAATGATATGTCTTGGAGAATTTGCAACAAAGGATGTGTTGGATTGGATTTTTAGTGATCCAAAAATCCTTCAAGCTTCATCAATTATTGGCAGAGTCATGGATGACATGGCCTCACATAAGTTTGAGCAACAAAGAGTACATGTCGCCTCATCTGTGGAATGTTGCATGAACCAATATGGTATTTCAGAAATAGAGGCCTATAAGCTTATTCGCAAGGACATTGAAGATTATTGGAAGGTTATAAATGAAGAGTACTTGAATTCCTACAATATCCCCAAATCTGTGCTTGACTGTGTAGCTAATTTTGCACGTATGTCAGAGTTTTCATATGAAAATCGTCAAGATAAATTCACAAATGGAGAATTATTAAAAGATGACGTTTCTTCTCTACTTTTGAATCCCATTTGCCTCGAAGAATGCAAGTAG 1578 0.358 MHQEVDDIMNQQAQILKEEVKMMFQSSNPNIMQKLNFIDSIQRFGISYHFQKEINQALEQIHNTLTKDNTIISEDGNHHFLALLFQLLRQQGYQISSNVFNKFKNEQGNFNETLANNIQGLCSLYEAAHLRIDGDDVLEEAYDFSNTQLMSLANQLSPSLAAQINHYLRQPLNKSVLRFEARYHMTVYEQDSSHNEILLTFAKVDFNILQKMHQKEIGIITKWWKQSNVMKKVPHARDRLVECYLWILAMSYKPEDSNGRMFAGKLSTVITLLDDAYDAYGTVEELELLTEAFKRWDIGLIGSLPLSMKVIFDTIVELSKEMELLTAHTGKSSLAVQHFKQAICNLAKAYMVEAKWCHKGYIPTYDEYKANGILTSCCPLLFTSMICLGEFATKDVLDWIFSDPKILQASSIIGRVMDDMASHKFEQQRVHVASSVECCMNQYGISEIEAYKLIRKDIEDYWKVINEEYLNSYNIPKSVLDCVANFARMSEFSYENRQDKFTNGELLKDDVSSLLLNPICLEECK 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01012 525 Pfam Terpene synthase family, metal binding domain 199 463 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca10g01012 525 Gene3D Farnesyl Diphosphate Synthase 3 505 IPR008949 -
Cca10g01012 525 SFLD Terpene Cyclase Like 1 C Terminal Domain 194 519 IPR034741 -
Cca10g01012 525 PANTHER OS04G0344100 PROTEIN-RELATED 4 519 - -
Cca10g01012 525 SUPERFAMILY Terpenoid synthases 194 519 IPR008949 -
Cca10g01012 525 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 5 194 IPR008930 -
Cca10g01012 525 CDD Terpene_cyclase_plant_C1 5 518 IPR044814 GO:0010333|GO:0016102
Cca10g01012 525 Pfam Terpene synthase, N-terminal domain 7 168 IPR001906 GO:0010333|GO:0016829
Cca10g01012 525 SFLD Isoprenoid Synthase Type I 194 519 - -
Cca10g01012 525 PANTHER TERPENE SYNTHASE FAMILY, METAL-BINDING DOMAIN PROTEIN 4 519 - -
Cca10g01012 525 Gene3D - 29 194 IPR036965 GO:0010333|GO:0016829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01012 Cca-Chr10 12153455 12156549 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01012 K15803 - gmx:100781367 759.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01012 10 12153455 12156549 Cca10g01012 10 12153455 12156549 ECH