Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01002 ATGTCCCTTCCAGCTTCAGCAGTTGTTTCAACCCAAAATGCAGTATCTGATATCAGACGACCTTGCGCGAGTTTTCCTCCCAACATATGGGGAGATACTTTCCTTCAATATGCTTCTGAGTTTATGGAAGTCAGTGACAATGTGAAGCAGCAAGCTCAAATGTTAAAGGAAGATGTGAGAATGATGTTTCAAGCATCCGTAAATCAAAATATCATCGACAAGTTAAACTTAATTGACTTAATCCAACGTTTCGGTGTATCCTACCAATTTCAACAAGAAATTAACCAAGCACTGAAACAAATTAACGACAGTTTCAATGAAGATGAAAATCATCACTCTCTTGCTCTACTTTTTCGGTTGCTTAGACAACAAGGATATCAAATTTCATCAAGCATATTTAACAAATTAAAAAATGACCAAGGAAACTTTGATGAAACACTTGTCAATGATATTCAAGGATTGTGTAACTTGTATGAAGCTACACATCTAAGAACTCACGAAGATGATATACTAGAAGAAGCGTATGACTTCTCCAAGACTCATCTGGAGTCCTTGGCCAACCGAGTGAGTCCATCTCTTGCTATCCAAATCGATCATTGCTTAAGGAGACCTCTTAATAAGAGTGTACTTAGGTTTGAGGCAAGGTATCACATGACTATATATGAACAAGATCCTTTTCATGATGAAACTCTACTAACCTTTGCAAAAGTCGATTTCAATATTCTTCAAAAAATACATCAAAAAGAAATTGGCAATATCAACAAGTGGTGGAGAAAATCAAACTTTGCAATAAAGGTTCCTTACGCTAGAGATAGATTGGTTGAAGCCTATCTTTGGTCATTAGCTACATCATCCAACAAACTTGAATACAGTTATATAAGAATGTTTATGGGAAAATTGACTGCTGTTGTTGCTCTTCTAGATGATACTTATGATGATTATGGCACTATTCAAGAACTTGAACTCTTCACAAAAGCAATTGAAAGATGGGATATTAATCCCTTTGGATGTCTTCCACAATGCATGAGAGTAGTGTTTGATACGGTTGTAGAATTTTGTGAAGAAATAAAGTTGAAGACAACTAAGACTGGAAAATCAAGTTTTGTGATGCCACATTTTAAACAAGCGATTTATAACTTAATTAAAGGCTACATGGTTGAAGCCAAATGGTGTCATGAGAGTTACGTTCCAACATATGATGAGTATAAAGTTAATGGAGTTTTAAGTTCTACTATCCCCTTTTTCATAACATCCTTTATTTGCATTGGAGAATTTGCAACAGAAAATGTGTTGGATTGGGCTTCTCGTGGTCCAAATATCATTGAAGCTGCATCAATTATTGGCAGAGTAGTGGATGACATGGCCTCACATAAGTTTGAGCAACAAAGAGTACATGTTGCCTCAGCTGTTGAATGTTGCATGAAGCAATATGACATTTCACAAGCAGACGCCTATAAACTTATTCACAAGGATGTTGAAGATTGTTGGAAGGTTATAAATAAAGAGTATCTCAATTTAAATGATATCCCAGAACCGGTGCTTGATTTTATTCTTAATTTGACCCGAATGTGTGAGGTTTCATATGAAAACCACCAAGATAGGTTCACAAATGGGGAATTGCTGAAAGAATACGTCTCTTCACTGCTTGTGGATCCTATGTGCATCAATCAACACCGCTAG 1680 0.3619 MSLPASAVVSTQNAVSDIRRPCASFPPNIWGDTFLQYASEFMEVSDNVKQQAQMLKEDVRMMFQASVNQNIIDKLNLIDLIQRFGVSYQFQQEINQALKQINDSFNEDENHHSLALLFRLLRQQGYQISSSIFNKLKNDQGNFDETLVNDIQGLCNLYEATHLRTHEDDILEEAYDFSKTHLESLANRVSPSLAIQIDHCLRRPLNKSVLRFEARYHMTIYEQDPFHDETLLTFAKVDFNILQKIHQKEIGNINKWWRKSNFAIKVPYARDRLVEAYLWSLATSSNKLEYSYIRMFMGKLTAVVALLDDTYDDYGTIQELELFTKAIERWDINPFGCLPQCMRVVFDTVVEFCEEIKLKTTKTGKSSFVMPHFKQAIYNLIKGYMVEAKWCHESYVPTYDEYKVNGVLSSTIPFFITSFICIGEFATENVLDWASRGPNIIEAASIIGRVVDDMASHKFEQQRVHVASAVECCMKQYDISQADAYKLIHKDVEDCWKVINKEYLNLNDIPEPVLDFILNLTRMCEVSYENHQDRFTNGELLKEYVSSLLVDPMCINQHR 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01002 559 SFLD Terpene Cyclase Like 1 C Terminal Domain 228 553 IPR034741 -
Cca10g01002 559 PANTHER OS04G0344100 PROTEIN-RELATED 2 554 - -
Cca10g01002 559 Pfam Terpene synthase, N-terminal domain 29 201 IPR001906 GO:0010333|GO:0016829
Cca10g01002 559 SFLD Isoprenoid Synthase Type I 228 553 - -
Cca10g01002 559 Pfam Terpene synthase family, metal binding domain 232 497 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca10g01002 559 CDD Terpene_cyclase_plant_C1 20 552 IPR044814 GO:0010333|GO:0016102
Cca10g01002 559 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 26 225 IPR008930 -
Cca10g01002 559 Gene3D - 69 227 IPR036965 GO:0010333|GO:0016829
Cca10g01002 559 Gene3D Farnesyl Diphosphate Synthase 27 539 IPR008949 -
Cca10g01002 559 SUPERFAMILY Terpenoid synthases 227 553 IPR008949 -
Cca10g01002 559 PANTHER TERPENE SYNTHASE FAMILY, METAL-BINDING DOMAIN PROTEIN 2 554 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01002 Cca-Chr10 11832198 11839680 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01002 K15803 - gmx:100781367 825.469
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01002 10 11832198 11839680 Cca10g01002 10 11832198 11839680 ECH