Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00998 ATGGCAGCCATGGCTGCTCTTCAGAGCTCAATGACCGCTCTCTCCCTCTCTTCCAACTCTTTCTTAGGCCAACGCTTTTCTCCCGCCACTCTCTGCCCCCTTCTTCCGGGTAAGTCATCAGAGAAGCAATGTCCTATTGTAATGAGGCTTAAACGATGGGAACGAAAGAAGTGTAAACCAAACAGCCTTCCTATCTTGCACAAAATGCATGTTAAAATTGGAGATACAGTGAAAATCATATCTGGACATGAAAAGGGTAAAGTTGGGGAGATTACTAGAGTCTTCAAGCATAACAGCACTGTTATAGTAAAAGATACAAATTTGAAGACAAAGCATGTGAAGAGTAGAGAAGAGGGAGAACCAGGGCAAATTATTAAGATTGAAGGTGCTATCCACAGCTCAAATGTGATGCTCTACTCCAAAGATCAGAATGTAACAAGCCGTGTGGGGCATAAAGTCCTTGATAATGGTAAAAAAGTCCGGTACCTTATAAAAACTGGAGAAATAATTGATACTACAGAGAATTGGAAGAAACTGAAGGAGGCTACTAAGAAAACTGAAGAAGCTGCTGCTGCTGCCTAG 582 0.421 MAAMAALQSSMTALSLSSNSFLGQRFSPATLCPLLPGKSSEKQCPIVMRLKRWERKKCKPNSLPILHKMHVKIGDTVKIISGHEKGKVGEITRVFKHNSTVIVKDTNLKTKHVKSREEGEPGQIIKIEGAIHSSNVMLYSKDQNVTSRVGHKVLDNGKKVRYLIKTGEIIDTTENWKKLKEATKKTEEAAAAA 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00998 193 SMART kow_9 70 97 IPR005824 -
Cca10g00998 193 Pfam KOW motif 74 104 IPR005824 -
Cca10g00998 193 Gene3D - 64 169 IPR014722 -
Cca10g00998 193 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 4 193 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca10g00998 193 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 107 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca10g00998 193 TIGRFAM rplX_bact: ribosomal protein uL24 68 170 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca10g00998 193 CDD KOW_RPL26 74 138 IPR041988 GO:0003723
Cca10g00998 193 PANTHER 50S RIBOSOMAL PROTEIN L24, CHLOROPLASTIC 4 193 - -
Cca10g00998 193 SUPERFAMILY Translation proteins SH3-like domain 67 169 IPR008991 -
Cca10g00998 193 ProSitePatterns Ribosomal protein L24 signature. 74 91 IPR005825 GO:0003735|GO:0005840|GO:0006412
Cca10g00998 193 Hamap 50S ribosomal protein L24 [rplX]. 69 165 IPR003256 GO:0003735|GO:0005840|GO:0006412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00998 K02895 - gmx:100306643 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00998 10 11749891 11753160 Cca10g00998 10 11749891 11753160 ECH