Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00993 ATGAGTAGTAGCTCTTCTAACAAGAAGCTTGAGGTTCAAACAGAAGATCAAACTCCACATAAATGGTGTGTCTCACTTGGAGAAGAGGCTTTCAAGAGATTCTTCAGCCAGACTAATCCAACAGTGCATAAGGTTTTTGGAGATGGATCACTTTTCAGTCCACTGTTGTTTGGGAAGTTCTTTGATCCTTCTGATGCCTTCCCTCTTTGGGAGTTTGAGTCAGATGTGTTGTTATCTCATTTAAGGAGCTCCAGCCAAAACCCTGTGGATTGGAGTGAGACTGATGAAGGCTATACATTAAAAGCAGAAATACCAGGAACTGGGAAAAGTAACATTCAAGTCCATGTTGATAAAGGGAAGGTTGTGGAAATTAGTGGACAGTGGAAGCAGCAAAGAGACTCAAAGGCACATGACTGGAGGTGTGGCCATTGGTGGGAATATGGATATGTACGAAGGCTTGAGATGCCAGAGGATGCAGATTGGAAGAACATAGAAGCTTACATACATAATGACACATATCTAGAAATACGAATACCGAAGAGCCAACACGGTTCTGATCTTGCTCAGGGAAAGGATGTGGCTTAA 585 0.4256 MSSSSSNKKLEVQTEDQTPHKWCVSLGEEAFKRFFSQTNPTVHKVFGDGSLFSPLLFGKFFDPSDAFPLWEFESDVLLSHLRSSSQNPVDWSETDEGYTLKAEIPGTGKSNIQVHVDKGKVVEISGQWKQQRDSKAHDWRCGHWWEYGYVRRLEMPEDADWKNIEAYIHNDTYLEIRIPKSQHGSDLAQGKDVA 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00993 194 Gene3D - 27 187 IPR008978 -
Cca10g00993 194 Pfam Hsp20/alpha crystallin family 90 192 IPR002068 -
Cca10g00993 194 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 5 183 - -
Cca10g00993 194 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 80 194 IPR002068 -
Cca10g00993 194 PANTHER 21.7 KDA CLASS VI HEAT SHOCK PROTEIN 5 183 - -
Cca10g00993 194 SUPERFAMILY HSP20-like chaperones 54 183 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00993 Cca-Chr10 11664634 11667189 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00993 - - gmx:100815742 382.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00993 10 11664634 11667189 Cca10g00993 10 11664634 11667189 ECH