Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00991 ATGAACCATCTTTGTTTCTCACACCTCACTCATTTGAGTTCCTTCACCATGGCACCTCTCACAAACTTGCATGGAGTCTCCAAAACTCTAATTCCCATCACATGCCTTCCAAATGCACACAGGATCTCAAAGAGGGGTCAAGTAGTTGGGTTTGTAGGAATCAAAACACAGGAGGAACCATCACAATGTGATATAATTCAGACCACAAGAAGAGCAACAGCAATAGGCCTTGCCACTATAGCTCTTAGTTGGCAATTCAATGACAAGATTTCATTGGCTAAGGATAATGGTTTTTGGTATGAAGATCACCCTCTTCCTGGAGCAACTGTCACTAACAATATTGCAAATGAGAAAACGGGGACACGTTCTTTTCTTAAAAGGGGGATCTACATAGCAAATATTGGAGTGAAAGGAAGTGTGTTAAGGATCAAGAAATATTCCTTTGATCTTCTGGCGATGGCGAGTTTGATAGCAGGAGACACACTCAACTATGTGAGGAAGTACCTAAGACTCAAGTCCACCTTCATATACTATGATTTTGACAAGATTATCTCCGCCATACCAGTGGATGATAAGCAGCAACTAACTGATATGGCTAACAAATTGTTTGATAATTTTGAAAGGCTTGAAGAAGCTGCAAGGAAGAAAAGTCTACCTGAAACACAGTCATGCTATCAGGAAACTGAAGTTATGCTTAAAGAGGTCATGGACCGGATGGATATATTGTACAAAACAGTTTGA 741 0.4035 MNHLCFSHLTHLSSFTMAPLTNLHGVSKTLIPITCLPNAHRISKRGQVVGFVGIKTQEEPSQCDIIQTTRRATAIGLATIALSWQFNDKISLAKDNGFWYEDHPLPGATVTNNIANEKTGTRSFLKRGIYIANIGVKGSVLRIKKYSFDLLAMASLIAGDTLNYVRKYLRLKSTFIYYDFDKIISAIPVDDKQQLTDMANKLFDNFERLEEAARKKSLPETQSCYQETEVMLKEVMDRMDILYKTV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00991 246 SUPERFAMILY Oxygen-evolving enhancer protein 3, 130 239 IPR023222 -
Cca10g00991 246 Coils Coil 192 212 - -
Cca10g00991 246 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 47 239 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cca10g00991 246 Gene3D - 102 240 IPR023222 -
Cca10g00991 246 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 17 239 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Cca10g00991 246 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 17 239 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00991 K08901 - gmx:100814163 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00991 10 11649864 11651488 Cca10g00991 10 11649864 11651488 ECH