Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00984 ATGGAGTCAATACTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCACCCGCGAGCAGTTCAAGCTTCAAGGACGCACCGTTCACCTCTCCAATCTAGATATCGACGGCGACGCCTTGCATTCCAGCGTCGGATTGCCGCCGGCGCTCAACGTTGCCACCGCCAAAGTCGGCAAGCTAGAGATAACACTTCCGTCGGTGAGCAATGTGCAAACGGAGCCTGTCGTCCTGCACATTGATAGACTCGATCTGGTTCTCGAGGAGAATTCTGATTTTGAAGCATCTCTTAGTTCGAACAGttCAACGCCGTCGGCTGCCTCCGCCAAGGGAAGTGGTTACGGTTTCGCTGATAAGATTGCAGATGGTATGACTATGCAAATTCAAACAGTTAATCTATTACTTGAAACTCGTGGTGGTTCTCGTCGCCAAGGGGGAGCTACATGGGCCCCACCTATGGCATCCATCACCATACGAAATCTTTTGCTGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGCACGGGAATTCTCCAGTAACACGAAGTACATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTGCCTCACCCCGACATGTTCACAGAGGCTACATTAGGCCACACTCAAGAGGGATCAAATTTTAGGGATGATGATGGTGCAAAGCGAGTATTCTTTGGAGGAGAGCGTTTTATTGAAGGAATATCAGGAGAAGCATATATCACAATTCAGAGAACCGAGTTGAATAGTCCACTTGGGCTTGAGGTTCAATTGCATATCAATGAAGCTGTTTGCCCTGCATTGAGCGAACCAGCAGGATTACGTGCGCTTCTCCGCTTTATGACGGGAGTATTTGTTTGTCTAAACAGGGGGGATCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTGTCAATTGTCGTAGATCATATATTTCTTTGTATTAAAGATACTGAGTTCCAGCTTGAACTTTTGATGCAGTCCCTCTGTTTTTCTCGGGCCAGCCTTTCTGAAGGAGATAGTGATAATAACTTGACCAGGATTACAATTGGTGGATTGTTTTTGAGGGACACCTTTTGTTCCCCTCCATGTATCTTAGTGCAACCATCAATGCAAGCTGCCACAAGAGATGCTTTCCATGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTACAAGAACAGCAGTGGCAATTGATTGAGGGAACCCCTCTAATATGCCTCCATGCTCTTCAGATCATGCCTTCTCCACTTCCACCATCATTTGCTTCTGAAACTGTTGTTGACTGTCAGCCTCTTATGATTCATCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCCGATGGTATTGTTGTCAATCCTGGCGACATTTTACCAGATTTCTCTGTGAAATCTTTTATTTTCAATCTCAAGGGACTTGATCTTACGGTTCCCTTTGACAAGATCAAATCAGATATTTCCAAAAGTGATATGGACAATACAGTCCAGACCTCCTTTGCTGGGGCAAGGCTTCATATTGAAAGCCTTTTCTTTTTAAATTCACCCTCACTAAAACTAAGAATGCTGAACCTGGAGAAGGATCCTGCTTGCTTCTGCCTTTGGGAAGGTCAACCAATTGATGCTAGCCAGAAGAAGTGGACTGCTAGAGCATCCCAACTTACTTTGTCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTGGACAGACAGCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAGTCCATTGTTACAAGTTCCCCCTCCTGGGGGTATTGTCAGGGTTGGAGTTGCTTGTGAACAGTATCTGTCCAACACTTCTGTTGAACAATTGTTTTTTGTCCTGGATCTATATGGTTATTTTGGGAGAGTTAGTGAAAAAATAGCAAGGGCTGGAAAAAGGAAACAATTGAAGGACATTAGTGACAAATCCTTTAGTGGAAAGCTGATGGACAAAGTTCCTAGTGATGCTGCTGTGAGTTTATCGGTGAAAAACCTCCAACTTCGATTTCTTGAGTCATCTTTGAATGTTGAGGGGACTCCTTTAGTGCAGTTTGTTGGAGATGATCTGTTTACTAATGCCACTCATAGAACCCTTGGTGGGGCTATTATTGTTTCATCTATTTTACGTTGGCAGAGTGTTGAGATAGGTTGTGTAGATGCTGAGGGACACTTGCCGTGTGAAAATGGCTCATTCTTGAGTTCTAAGGAAAATGTTCCCTCACTGTGTGATAATGGATATCCTCAACTAAGAGCTGTTTTCTGGGTGCATAAGAATGAGAAACATCTATCGAAGGGAAATGCTCATTCAGTCCCTTTTCTGGACATAAGCATTGTGCACGTAATACCATTATATGAACAAGACTTGGAGTCTCGTAGTTTGAATGTCTCAGCTTCTATATCTGGCGTTCGTCTTGGTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGGCCTGATGGAGGTCCTGGGATGGGTCTTTGTAAAGGGTTAGAAAACTTACAAAAGGGACCATTGTCAAAGGTTTTTAAGGCAACTCCTCTCATTGTTAATGATTCAGAAGATGTTGGAAGTAAGGGAGAAGGGAAAGAAACCGGTTTTCCCCAATTGAAGAAGCCTGATGATGTGGATGTAACTGTAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGATACAGCTGAAAGGTGGTGGTTCTCCAGCCATGAAGATGAAGACAGAGAAGACAGGAGTTGGCATGCATCTTTCCATGGTTTACGAGTAAATGCAAAAAGTAGCCCAACAAATGTTCCAGATGGAAAGGCACAATTGCAAAGAATAAAACAATATCCAGTAGAACTGATTACGGTTGGAGTTCAAGGACTGCAAATCTTGAAGCCTCATATGCAAAAAGACATTCCTTCATCAGTGCTAATTGAAAATGGGGGTAAAGAATTCAACGACACAGCTGGGGGTATTGGTCTTGAAGTTCGCTTGATCTTAGGTGGTGAGAATGTCGATGATGAAATGGCAAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATCGAGGCAGTAGTAACCAAGGAAGAGGTTCAGCACCTCACGTTTCTGTGCAAATCTGAAATTGACTCAGTTGGTCGGATAACTGCTGGAATTATACGATTGCTGAAGTTAGAAGGTTCTGTTGGCCAGTCTGTAATAGATCAACTCAGCCACCTAGGAAGTGAAGGCATTGACAAGATTTTCTCTCCTGAAAAGGTTAGTAGAGATGGTAGTGTTGGTAGCAGAGGACTTTCTCCATTGCCAAATCTCATCAATGAGGAATCACACAGAACTTCGGAACAAACATTAACTTTGCTTGAGGAAGCACTTGTGGATTCACAGGCTACACTTAATGATTTAGTCAGTGATATTGGTACTTCACAGACTTCCTCTCAACACGTTAACATCGTCCAACTGAGTCAAAAGATTGATACTATGCAGGACTTGTTGATGCAATTACGGAATCAACTTTAA 3627 0.4334 MESILGRALEYTLKYWLKSFTREQFKLQGRTVHLSNLDIDGDALHSSVGLPPALNVATAKVGKLEITLPSVSNVQTEPVVLHIDRLDLVLEENSDFEASLSSNSSTPSAASAKGSGYGFADKIADGMTMQIQTVNLLLETRGGSRRQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEAREFSSNTKYIYVFKKLEWQSLSIDLLPHPDMFTEATLGHTQEGSNFRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPAGLRALLRFMTGVFVCLNRGDRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLCFSRASLSEGDSDNNLTRITIGGLFLRDTFCSPPCILVQPSMQAATRDAFHVPEFARSFCPPIYPLQEQQWQLIEGTPLICLHALQIMPSPLPPSFASETVVDCQPLMIHLQEESCLRISSLLADGIVVNPGDILPDFSVKSFIFNLKGLDLTVPFDKIKSDISKSDMDNTVQTSFAGARLHIESLFFLNSPSLKLRMLNLEKDPACFCLWEGQPIDASQKKWTARASQLTLSLEACTDRTGCQNSLGQTAGLWRCVDLKDACIEVAMATADGSPLLQVPPPGGIVRVGVACEQYLSNTSVEQLFFVLDLYGYFGRVSEKIARAGKRKQLKDISDKSFSGKLMDKVPSDAAVSLSVKNLQLRFLESSLNVEGTPLVQFVGDDLFTNATHRTLGGAIIVSSILRWQSVEIGCVDAEGHLPCENGSFLSSKENVPSLCDNGYPQLRAVFWVHKNEKHLSKGNAHSVPFLDISIVHVIPLYEQDLESRSLNVSASISGVRLGGGMNYAEALLHRFGILGPDGGPGMGLCKGLENLQKGPLSKVFKATPLIVNDSEDVGSKGEGKETGFPQLKKPDDVDVTVELRDWLFALEDAQDTAERWWFSSHEDEDREDRSWHASFHGLRVNAKSSPTNVPDGKAQLQRIKQYPVELITVGVQGLQILKPHMQKDIPSSVLIENGGKEFNDTAGGIGLEVRLILGGENVDDEMANWEVENLKFSVKQPIEAVVTKEEVQHLTFLCKSEIDSVGRITAGIIRLLKLEGSVGQSVIDQLSHLGSEGIDKIFSPEKVSRDGSVGSRGLSPLPNLINEESHRTSEQTLTLLEEALVDSQATLNDLVSDIGTSQTSSQHVNIVQLSQKIDTMQDLLMQLRNQL 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00984 1208 Coils Coil 1187 1207 - -
Cca10g00984 1208 Pfam N-terminal region of Chorein or VPS13 1 101 IPR026854 -
Cca10g00984 1208 PANTHER UNCHARACTERIZED 1 1207 IPR026728 -
Cca10g00984 1208 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00984 Cca-Chr10 11546977 11561701 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00984 - - gmx:100803142 2160.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00984 10 11546977 11561701 Cca10g00984 10 11546977 11561701 ECH