Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00981 ATGGTGGCTGAAGGAAAATCATTTGGTTTGGGGTGTGACCCAGTAGTGGGATCGTTGAATCCTGTGAAGAAGAGGGAATACAGAGTCACCAATCGCCTCCAAGAGGGAAGGCGCCCTCTATACGCCGTCGTTTTCAACTTCATTGACTCCCGCTACCTCAACGTTTTCGCCACTGTTGGTGGCAACAGGATCACTGTTTATCAATGTCTTGACGGAGGAGTTATTGCTGTTTTGCAATCTTATGTGGACGAAGATAAGGATGAGTCTTTCTACACAGTGTGTTGGGCATGCAATGTTGATGGGTCACCATTTGTTCTGGCTGGAGGAATCAATGGGGTGATCCGAGTCATTGATGCTGGCAGTGAGAAGATATACAAGAGTTTTGTTGGCCATGGGGACTCCATAAATGAAATTAGGACTCAATCATTGAAGCCATCACTTGTGATATCTGCAAGCAAAGATGAATCTATTCGGTTATGGAATGCTCATACTGGAATATGCATTTTGATATTTGCTGGAGCTGGAGGACATCGTAATGAAGTCTTAAGTGTTGATTTCCATCCATCGGATATATATCGCATTGCTAGCTGTGGCATGGATAATACTGTGAAAATATGGTCTATGAAGGAGTTCTGGTCATATGTAGAAAAATCATTCACATGGACAGATCTTCCTTCCAAGTTCCCCACAAAATATGTCCAATTTCCTGTATACAATGCTTCAGTTCATATTAATTATGTTGACTGTAATAGGTGGCTGGGTGATTTTATCCTCTCAAAGAGTGTTGACAATGAAATTATCTTGTGGGAACCTAAACTGAAGGAACAAACACCAGGGGAGGGTGTAGTTGACGTCCTGCAGAAATACCCTATTCCCGAGTGTGATATCTGGTTCATCAAATTTTCTTGTGATTTCCATTACAACGTAGCTGCAGTAGGTAACAGGGAAGGGAAGATTTTTGTTTGGGAATTGCAGGCAACTCCTCCTGTACTTAATGCAAGGTTGATACATCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACATCCTTTGATGGAAACACTATTCTGAGTTGCTGTGAGGATGGGACAATATGGCGCTGGGATTTAGTTACAAGCTCCTAA 1125 0.4249 MVAEGKSFGLGCDPVVGSLNPVKKREYRVTNRLQEGRRPLYAVVFNFIDSRYLNVFATVGGNRITVYQCLDGGVIAVLQSYVDEDKDESFYTVCWACNVDGSPFVLAGGINGVIRVIDAGSEKIYKSFVGHGDSINEIRTQSLKPSLVISASKDESIRLWNAHTGICILIFAGAGGHRNEVLSVDFHPSDIYRIASCGMDNTVKIWSMKEFWSYVEKSFTWTDLPSKFPTKYVQFPVYNASVHINYVDCNRWLGDFILSKSVDNEIILWEPKLKEQTPGEGVVDVLQKYPIPECDIWFIKFSCDFHYNVAAVGNREGKIFVWELQATPPVLNARLIHPQSKSPIRQTATSFDGNTILSCCEDGTIWRWDLVTSS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00981 374 Gene3D - 23 371 IPR015943 GO:0005515
Cca10g00981 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 128 170 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 71 118 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 233 270 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 164 207 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 332 369 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 282 323 IPR001680 GO:0005515
Cca10g00981 374 SMART WD40_4 121 161 IPR001680 GO:0005515
Cca10g00981 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 174 209 - -
Cca10g00981 374 PANTHER POLYCOMB PROTEIN 9 372 - -
Cca10g00981 374 SUPERFAMILY WD40 repeat-like 32 370 IPR036322 GO:0005515
Cca10g00981 374 Pfam WD domain, G-beta repeat 342 369 IPR001680 GO:0005515
Cca10g00981 374 Pfam WD domain, G-beta repeat 126 161 IPR001680 GO:0005515
Cca10g00981 374 Pfam WD domain, G-beta repeat 175 207 IPR001680 GO:0005515
Cca10g00981 374 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Cca10g00981 374 PRINTS G protein beta WD-40 repeat signature 194 208 IPR020472 -
Cca10g00981 374 PRINTS G protein beta WD-40 repeat signature 356 370 IPR020472 -
Cca10g00981 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 174 209 IPR001680 GO:0005515
Cca10g00981 374 ProSitePatterns Trp-Asp (WD) repeats signature. 148 162 IPR019775 -
Cca10g00981 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 128 165 - -
Cca10g00981 374 PANTHER BNAA05G20190D PROTEIN 9 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00981 Cca-Chr10 11537776 11541573 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00981 K11462 - gmx:100795288 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00981 10 11537776 11541573 Cca10g00981 10 11537776 11541573 ECH