Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00979 ATGCAAGTGCGTTACTCTTACTACGTTCGATGTCTCAGCACTAGGCTCTATTCACGTTCAGCCACCAAACGCGCCACTTCCAAATCCCAATCTTCTTCTTCAACCTCTTCATTCCTTTCGGGACTCGATGGGAATAACACGCTCTCAAGCCTCAAGCTTAAGCGAGCCTCTGATTCCGGTGATTCGTCTCATGCGGTGGTTGACCATATTTCTTCAATTTTTCGCGGTGGTAAGGCAGTCAAGAAACCTGTTTCTGAGGAAATTGATTGTGCAAAGGAGTTTGAACGAATGCCAAATCTATCATGGTTGTCAGGTGTATCCCAAAGCAAGATAATACTGCAACGGACAGATCAATCTCGTAACAAGAAGCAAAAATGTGTGTTTGACTTTAATCAAGAAAAACGTTTTCAGAAGTTAATTGAAGTCTGTGCAAAGATACTAGGACCAGAGGCTACCCTTGAGTTGTTTGGTAAAGTGGGACGAGAACCAGGTGTGAAAGGATACAATGCATTGGTAGAAATGTGTATAGATAAGGCAAGGGGAACTGATGATGAAGACATTGCAATAGAAGAACTGGGGAAGGTTTTTAACCTTTTTAAATCAATGAGGGAACAAGGTTTAGAGCTACAAGAGCAAACATATCGCCCACTTCTTTTGTATATGATTGACATGCATATGGTTGAGGAGTTTCAATTTTTCTGTATTGTTATCAAAGATGAGAATCCCAGTTCAGTTACAAGGCTGGGTTACTATGAAATGTTATTGTGGTTAAAAGTTGACAACGAAGAAAAGATTCGTGGTATTTGTAACTATATTGCAGAGAATGATGGTGAGGACATGTCTGATATACAAGAAAGTTATTTATTGGCTCTTTGTGAAAGTGAAAGGACAGAGGAGATTTTGAAGATGCTGGAAATCATAGGCATAAAAAACATTTCATCTGCTGAATCTGTAGCAAAGATATTTCAGGCATTAGGAAGATTGCTATTGGAACCTGTTGCGGAGAAGTTTCTTTTAGACTTCAAAACAAGTGATCATGAAGCAGATAATATTACAAACTTCATTGCTAGTTATGCAGTTAGCATTCCAAATATACCGGTTGAGGATGTCATAAAAAAATTCAAAGATTTGCACCAAAGACTAGAAGTTTCACCTTCATCCTCATCATACGAGAAGCTCATTTTACATAGCTGTGAATTTCTGAAGGTGCATGTAGCGCTTGAAATTGTTGATGAAATGTGTGAAGCAGGCTTGACTTTATCAGTTGATGTGTTACACTCGATATTACAAATTTGTGACAAAACAGCTGAATACAATTTGGTTCATCGAATCTTCTCTACCATACGTCGCTACAATTTGGAATCAAACAATGAAACATTCAGATCTATGATAGACTTGTTCTTGAAGATGAAAGATATTGAAGGTGCATATAAGATGCTTGACGATTTGGAGGAATTAAATTTGAAGCCGACAGCAAAGATGTACAATGTCATAATAGCAGAATATTTTAGAGAGGGAAACATTAGTGACGGGGTTAGGGTTCTTGAGCACATGCAATGTGCTGATATAAAGCCTAATTCACAGACTTTCAGCTACCTGATTAGAAACTCTAAAACTGAAGAGGATATAGTGAAGTATTATGAAGAACTGAAGCAATCTGGAATAGTAGCTACAAAGCAAATTTTCATGGCACTTATATATGCTTATGCTGCTTGTGGACAGTTGGAGAAAGCAAAAAAGGTAATCTTAGATCCATTGATACCACCGAACAGCTTGAATCAAATCAAGGCTGTTCTTGTCTCGGTACTTGCATCACAGAGTCAATTGTCTGAGGCTCTTGTTATTTATGAAGAAATCAAGAAAGCTGGATACAAGCTGGAGGCAAAGGATGTTATGAGTCTCATTGAGCACACTCATTCCGATGGAGAGTTGGATAGGTTGCTTCTGCTACTTGAGGAATTGTATGACACAGACTATTGGAATGATGCTTGCTGCAGAATCATCTTGTATTGTATTTGGAATAAGCATTTAAGTTCTGCTGTTGAGTTGTGTAATCTGCTCAAGGATAAGTTGGAAAGTGATGAGCAAGTTATGGAAGTTCTCTTTGATAAGGTGTTTTCTCTGATTGAAGAGTCCGAGTCCAGTCATTTGCACACTTGCCTCGAGTTGCTTTCGGAAATCAAGGATAAGCTTGGCCTTTTGCCTTCCCAGAAATGTGATGATTCTCtgctacgtgcttgtgctaatgctaatgctaatgccactgatttgcataatactgaatgA 2286 0.3762 MQVRYSYYVRCLSTRLYSRSATKRATSKSQSSSSTSSFLSGLDGNNTLSSLKLKRASDSGDSSHAVVDHISSIFRGGKAVKKPVSEEIDCAKEFERMPNLSWLSGVSQSKIILQRTDQSRNKKQKCVFDFNQEKRFQKLIEVCAKILGPEATLELFGKVGREPGVKGYNALVEMCIDKARGTDDEDIAIEELGKVFNLFKSMREQGLELQEQTYRPLLLYMIDMHMVEEFQFFCIVIKDENPSSVTRLGYYEMLLWLKVDNEEKIRGICNYIAENDGEDMSDIQESYLLALCESERTEEILKMLEIIGIKNISSAESVAKIFQALGRLLLEPVAEKFLLDFKTSDHEADNITNFIASYAVSIPNIPVEDVIKKFKDLHQRLEVSPSSSSYEKLILHSCEFLKVHVALEIVDEMCEAGLTLSVDVLHSILQICDKTAEYNLVHRIFSTIRRYNLESNNETFRSMIDLFLKMKDIEGAYKMLDDLEELNLKPTAKMYNVIIAEYFREGNISDGVRVLEHMQCADIKPNSQTFSYLIRNSKTEEDIVKYYEELKQSGIVATKQIFMALIYAYAACGQLEKAKKVILDPLIPPNSLNQIKAVLVSVLASQSQLSEALVIYEEIKKAGYKLEAKDVMSLIEHTHSDGELDRLLLLLEELYDTDYWNDACCRIILYCIWNKHLSSAVELCNLLKDKLESDEQVMEVLFDKVFSLIEESESSHLHTCLELLSEIKDKLGLLPSQKCDDSLLRACANANANATDLHNTE 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00979 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 491 525 IPR002885 -
Cca10g00979 761 PANTHER OS02G0132600 PROTEIN 70 751 - -
Cca10g00979 761 TIGRFAM PPR: pentatricopeptide repeat domain 494 526 IPR002885 -
Cca10g00979 761 TIGRFAM PPR: pentatricopeptide repeat domain 459 491 IPR002885 -
Cca10g00979 761 Pfam PPR repeat 562 582 IPR002885 -
Cca10g00979 761 Pfam Pentacotripeptide-repeat region of PRORP 403 552 IPR033443 -
Cca10g00979 761 PANTHER OS02G0132600 PROTEIN 70 751 - -
Cca10g00979 761 Gene3D Tetratricopeptide repeat domain 390 539 IPR011990 GO:0005515
Cca10g00979 761 Gene3D Tetratricopeptide repeat domain 540 676 IPR011990 GO:0005515
Cca10g00979 761 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00979 Cca-Chr10 11521688 11531939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00979 363 655 Glycosyltransferase AT1G05670 19.706 5.36e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00979 - - gmx:100306302 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00979 10 11521688 11531939 Cca10g00979 10 11521688 11531939 ECH