Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00969 ATGCTGACAAGCATTGTTGATACCACGAATCATTGCCTTTTAGTTGCTTGTGTTATTCCTTTCGTTTGGTTAATTGGGATGTGGAGAGATCCGGGAGTTTCAGCTGATTCTTTCTATGAAATTCGCCCTGAATGCACCGATGTTCCCACTTCTCGATTTAAGATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATAACGCGTTTACTGCAGAAGGATATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCAATTAGGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTTTGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGAAGAATGCAATATGCTACATGGAAAGAAGAATGCCGCCAATTGTTTCCTCTTATTGGAAGTGGTAGATTTGTCACAGCACCTGTTATTACTGAAGATGGTCAACCAACTCATGATCCGTTGGTTCTGAAAGAAATAAATCCAGCAAAGGAATTGGCTGTACTTCCACTAGATAATAATAGTCCTTCTAGAACAGATGCTGCAAATAATTTAGAAAAGGTGACAGACAAGATAGTAATCCAATGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACTGATAGGACATTGGTTTTTTATGAGAAGCAAGAAAACTTGTCGAAACTATGGGATATTCTTGCTGTTTATGCTTGGATTGATAAAGACGTTGGCTATGGTCAAGGAATGTGTGACCTGTGCTCACCTATGATAATTCTTCTTGATGATGAAGCAGATGCATTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTCAGATGCACAGAGAAATCTGTTGGAGTGGAGGCTCAACTAAGTACTTTGGCTTCAGTTACTCAAATAATTGATCCTAAACTACATAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTATTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCATTGTACCTTTGGGAGATGATGTGGGCTCTAGAATATGATCCTGACTTGTTCTTGATGTATGAAGAATCTCAATTATCTTTTGAAAAAGCTAAGGGCTCTAAAGGAAAAACAAAGTCAATACGTCAATGTGGAAAGTATGAGAGAGAAAATTTGAAAAGTGGAGCAAAGAATGCGGAATCGCCTCTTCCTATATCTGTTTTCCTTGTTGCTAGTGTATTGAAAGATAAAAGTGCAAAACTACTCCATGAAGCACGAGGTTTGGATGATGTTGTCAAGATTTTGAATGACATAACTGGAAATCTAGATGCCAAAAAAGCTTGCAGTGGGGCTATGAAACTTCACAAGAAATATTTGAAAAAGGCCAAGAAACCCTAG 1407 0.3923 MLTSIVDTTNHCLLVACVIPFVWLIGMWRDPGVSADSFYEIRPECTDVPTSRFKIKAGKTLSARKWHNAFTAEGYLDIGKTLSRIYRGGVHPSIRGEVWEFLLGCFDPKSTFEERDQIRQRRRMQYATWKEECRQLFPLIGSGRFVTAPVITEDGQPTHDPLVLKEINPAKELAVLPLDNNSPSRTDAANNLEKVTDKIVIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTEKSVGVEAQLSTLASVTQIIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLMYEESQLSFEKAKGSKGKTKSIRQCGKYERENLKSGAKNAESPLPISVFLVASVLKDKSAKLLHEARGLDDVVKILNDITGNLDAKKACSGAMKLHKKYLKKAKKP 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00969 468 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 186 285 - -
Cca10g00969 468 Gene3D - 291 467 - -
Cca10g00969 468 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 65 315 IPR035969 -
Cca10g00969 468 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 27 468 - -
Cca10g00969 468 ProSiteProfiles TBC/rab GAP domain profile. 89 355 IPR000195 -
Cca10g00969 468 Pfam Rab-GTPase-TBC domain 200 353 IPR000195 -
Cca10g00969 468 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 27 468 - -
Cca10g00969 468 SMART tbc_4 86 378 IPR000195 -
Cca10g00969 468 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 293 461 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00969 Cca-Chr10 11292575 11301589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00969 - - aprc:113854580 806.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00969 10 11292575 11301589 Cca10g00969 10 11292575 11301589 ECH