Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00967 ATGATTTCTTCAAGCAAAATCAAATCCGTGGATTTTTACAGGAAAATTCCAAGAGATTTAACTGAGGCATCATTATCTGGAGCAGGTTTATCTATAGCAGCAGCTCTCTGCATGGTGTTTTTATTTGGAATGGAACTTAATAGTTATATGTCTGTCAGCACCTCTACATCTGTGATTGTTGACAAGAGTTCTGATGGGGACTATTTACGTATGGATTTCAATATCAGTTTTCCTGCCCTCTCTTGTGAGTTTGCATCAGTTGATGTGAGTGACGTGTTGGGAACAAACAGGCTGAATCTAACAAAAACAATTCACAAATTTTCTATTGATTCAAATTTAACACCCACTGGTGCTGAATTCCAATCGGGAACATCTACTGACCACATTAAGCACGGTAATGAAGCACATGAAGAGTCCATTGAAGGTTGTGTTGTACTCACAACACAAAACTTTGATAAATATGCTCATCAGTTTGCTATTACAGTTGTTAACTTTTATGCTCCTTGGTGTTACTGGAGTCAACGCTTGAGACCTTCATGGGAGAAGGCAGCTAAAATAATTAAGGAAAGATATGATCCAGAAACTGATGGTCGTATTGTTATGGGAAAGGTAGATTGCACTGCAGAAGGAGACTTATGCCGAAGGCATCATATACAAGGTTATCCTTCAATTCGTATCTTTCGTAAAGGAAGTGATGTTAGAAGTGATCATGGACACCATGAACACGAGTCCTATTATGGAGATCGTGACACAGAAAGCCTAATCAAGACAATGGAGCATTTAGTGGCATATCTCCCTTCTGAATCTCAGAAGTTAGCTTTCGAGGAGAAATCCAGTGTTGCCAGGAATATAAAAAGGCCAGCACCATCAGCAGGGGGATGTAGAATCGAAGGATATGTGCGTGTCAAGAAGGTTCCCGGAAACTTGATCGTCTCAGCTAGATCTGATGCTCATTCCTTTGATGCTTCTCAAATGAATATGTCACATGTCATAAACCATTTGTCGTTTGGAAGGAAAGTGTCACCTAGGGTCATGAGTGATGTGAAGCGGTTGATACCTTATGTTGGAAGCAGCCATGACAGACTGAATGGTCGCTCATTTATCAATGCACAAGATTTAGGAGCAAATGTTACTATGGAGCATTACCTTCAGATAGTTAAAACAGAGGTGATAACAAGAAAAGATTATAAATTAATTGAGGAGTATGAGTACACAGCACATAGCAGTGTGGCACAGAGTTTACACATTCCTGTTGCTAAGTTCCATCTTGAGCTCTCCCCCATGCAGCAGGTTTTAATAACGGAAAACCAAAAGTCCTTTTCTCACTTTATTACAAATGTGTGTGCTATTATTGGGGGCATTTTCACGGTTGCTGGAATTATGGACTCCATTTTGCACAACACTATTAGGCTAATGAAAAAAGTTGAGCTTGGCAAAAACTTTTGA 1446 0.3963 MISSSKIKSVDFYRKIPRDLTEASLSGAGLSIAAALCMVFLFGMELNSYMSVSTSTSVIVDKSSDGDYLRMDFNISFPALSCEFASVDVSDVLGTNRLNLTKTIHKFSIDSNLTPTGAEFQSGTSTDHIKHGNEAHEESIEGCVVLTTQNFDKYAHQFAITVVNFYAPWCYWSQRLRPSWEKAAKIIKERYDPETDGRIVMGKVDCTAEGDLCRRHHIQGYPSIRIFRKGSDVRSDHGHHEHESYYGDRDTESLIKTMEHLVAYLPSESQKLAFEEKSSVARNIKRPAPSAGGCRIEGYVRVKKVPGNLIVSARSDAHSFDASQMNMSHVINHLSFGRKVSPRVMSDVKRLIPYVGSSHDRLNGRSFINAQDLGANVTMEHYLQIVKTEVITRKDYKLIEEYEYTAHSSVAQSLHIPVAKFHLELSPMQQVLITENQKSFSHFITNVCAIIGGIFTVAGIMDSILHNTIRLMKKVELGKNF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00967 481 ProSiteProfiles Thioredoxin domain profile. 114 263 IPR013766 -
Cca10g00967 481 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 481 IPR045888 -
Cca10g00967 481 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Cca10g00967 481 Pfam Endoplasmic reticulum vesicle transporter 289 462 IPR012936 -
Cca10g00967 481 Gene3D Glutaredoxin 127 286 - -
Cca10g00967 481 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 481 - -
Cca10g00967 481 Pfam Thioredoxin 144 243 IPR013766 -
Cca10g00967 481 CDD PDI_a_family 144 258 - -
Cca10g00967 481 SUPERFAMILY Thioredoxin-like 144 260 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00967 Cca-Chr10 11271188 11282668 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00967 - - gmx:100806869 858.211
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00967 10 11271188 11282668 Cca10g00967 10 11271188 11282668 ECH