Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00953 ATGGCTCAGTTATTGTCTCCAGTGTGTATGGAGGCTGTCAACATCCACAACCCACTATTGAATTTGTGTTCTAAAAACTCATGGAGAATGATGGTGAAGGCTGCTAGTCCATGCACCTTTGTGACACACAGTGGAAAGAGAAGAGGATGTGGCAGGGTAAGAGTTACTGCTGAAGACTCGGTTTCTCCCACTGAGGCTGTTGCAGATGACTATTATGCAGTTCTGGGACTGCTTCCAGACGCCACACCTGAGCAAATCAAGAAGGCATACTACAATTGCATGAAATCTTGCCACCCGGACTTGAGTGGAAATGATCCTGAGACTACAAATTTCTGCATGTTTATCAATGAAGTCTACACGGTGCTCAGCGATCCCATCCAACGCAGGATTTATGATGAAATTCATGGGTATTCTTTAACGTCAATCAACCCTTTCCTGGATGATTCAAGCCCAAAGGATCATGCCTTTGTTGATGAATTCAGCTGCATAGGCTGCAAAAATTGTGCAAATGTAGCCCCTGATGTATTTGCAATTGAGGAAGACTTTGGAAGAGCCAGAGCATACAACCAAAGCGGGAATCCTGACCTAGTTCAACAGGCAATTGACAGTTGCCCTGTTAGCTGCATTCATTGGACATCTGCTGCACAACTATCATTACTAGAAGATGAGATGCGCCGTGTAGAAAGAGTCAATGTTGCCCTAATGCTATCAGGAATGGGAACAGCATCAATTGATGTTTTCAGAATGGCAAGTTCCAGATGGGAAAAGAGGCAGTCAAAAGTCTTGGAAAAAGCAAAATTGAGAATGATGAAGCAAGAAGGTTCTGATAAGAAAAATTCGTACTGGGACAATCTTTGGGGCAAACAGAAAGAGTATCAAAGTTCAGATGAGGAAGTTGAAGAAAGAGCAAAAAGAGCTGCTTCAGCAGCACGAAGATGGAGGGAATACTCAAGGAGGGGTGTTGATAAGCCTCCTACATTTAAACTTCCAGAGGCAAGCCCTGGCAAGGAAAATTGA 1017 0.4376 MAQLLSPVCMEAVNIHNPLLNLCSKNSWRMMVKAASPCTFVTHSGKRRGCGRVRVTAEDSVSPTEAVADDYYAVLGLLPDATPEQIKKAYYNCMKSCHPDLSGNDPETTNFCMFINEVYTVLSDPIQRRIYDEIHGYSLTSINPFLDDSSPKDHAFVDEFSCIGCKNCANVAPDVFAIEEDFGRARAYNQSGNPDLVQQAIDSCPVSCIHWTSAAQLSLLEDEMRRVERVNVALMLSGMGTASIDVFRMASSRWEKRQSKVLEKAKLRMMKQEGSDKKNSYWDNLWGKQKEYQSSDEEVEERAKRAASAARRWREYSRRGVDKPPTFKLPEASPGKEN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00953 338 CDD DnaJ 70 124 IPR001623 -
Cca10g00953 338 MobiDBLite consensus disorder prediction 291 338 - -
Cca10g00953 338 PRINTS 3Fe-4S ferredoxin signature 157 168 IPR001080 GO:0005506|GO:0009055
Cca10g00953 338 PRINTS 3Fe-4S ferredoxin signature 168 178 IPR001080 GO:0005506|GO:0009055
Cca10g00953 338 PRINTS 3Fe-4S ferredoxin signature 197 209 IPR001080 GO:0005506|GO:0009055
Cca10g00953 338 Pfam DnaJ domain 70 132 IPR001623 -
Cca10g00953 338 PRINTS DnaJ domain signature 72 90 IPR001623 -
Cca10g00953 338 PRINTS DnaJ domain signature 90 105 IPR001623 -
Cca10g00953 338 PRINTS DnaJ domain signature 107 127 IPR001623 -
Cca10g00953 338 Pfam 4Fe-4S single cluster domain of Ferredoxin I 157 211 - -
Cca10g00953 338 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 181 IPR017896 -
Cca10g00953 338 MobiDBLite consensus disorder prediction 291 325 - -
Cca10g00953 338 Gene3D - 154 213 - -
Cca10g00953 338 SUPERFAMILY Chaperone J-domain 69 134 IPR036869 -
Cca10g00953 338 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Cca10g00953 338 PANTHER OS01G0730500 PROTEIN 1 337 - -
Cca10g00953 338 SUPERFAMILY 4Fe-4S ferredoxins 155 211 - -
Cca10g00953 338 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 337 - -
Cca10g00953 338 SMART dnaj_3 69 127 IPR001623 -
Cca10g00953 338 Gene3D DnaJ domain 54 144 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00953 Cca-Chr10 11052403 11057878 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00953 - - gmx:100786494 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00953 10 11052403 11057878 Cca10g00953 10 11052403 11057878 ECH