Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00709 ATGACTTGGAAAAGCAGGGGAGACCTGTTTCCTAAAAGTCTCATGTCTCAGAAATGGGTCATTTTTCTCTGTATTGGAAGCTTCTGTGCTGGCATGTTTTTCACCAACAGGATGTGGACTATACCTGAACCTAAAGGACTTGCACGGACAACCGCTATGGAAGCTGAAAAATTGAATGTGGTTTCAGAGGGTTGCAATTCGAGAATTTTGCAAGAGAAGGAAGTGAAGCGTGAAACTAAAGGCATCTACAGTGAGGTTTTCAAGACACAAAATGTCATACAAACCCTGGACAAGACTATTTCAAACTTGGAGATGGAATTAGCAGCCGCAAAGGCAGCTCAGGAGTCTATACGAAATGGTGCTCCAGTGCCAGAAGATATCAAGATGAGTGAATCATCTGTTAGGAGGAGGTACCTAATGGTCGTAGGAATTAACACTGCTTTCAGCAGCAGAAAAAGAAGAGACTCAGTTCGTGAGACATGGATGCCACAAGGTGAGAAAAGAAAGAAGCTGGAAGAAGACAAGGGCATTATAATCCGCTTTGTAATTGGTCATAGTGCCACATCAGGGGGTATCCTAGACAGAGCTATTGAAGCAGAAGATAGGAAGCATGGGGATTTCCTGAGACTGGATCATGTTGAAGGATACCTTGAATTGTCAGCAAAGACAAAAACATACTTTGCCACTGCTGTTAACTTATGGGACGCTGACTTCTATATCAAAGTTGATGACGATGTTCATGTCAATATAGCGACACTGGGACAGACTCTAGTGAGACACCGATCAAAACCACGGGTGTACATTGGATGCATGAAATCTGGGCCTGTGCTTTCTCAAAAAGGGGTAAGGTATCATGAACCAGAATTCTGGAAATTTGGAGAGGCTGGAAACAAGTACTTCCGTCATGCCACAGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATATATTTCAATTAACCAGCACGTTCTTCATAAGTATGCCAATGAGGATGTCTCACTTGGTTCTTGGTTTATTGGACTTGATGTGGACCACATAGATGATCGAAGATTATGCTGCGGCACTCCACCAGATTGTGAATGGAAAGCACAGGCAGGCAATGTTTGTGTTGCTTCATTTGATTGGACATGCAGTGGAATTTGTAGGTCTGCTGAAAGGATCAAAGAGGTTCACAAGAGATGTGGAGAAGGTGAGAAAGCCTTGTGGAATGCCTCTTTCTAA 1224 0.4314 MTWKSRGDLFPKSLMSQKWVIFLCIGSFCAGMFFTNRMWTIPEPKGLARTTAMEAEKLNVVSEGCNSRILQEKEVKRETKGIYSEVFKTQNVIQTLDKTISNLEMELAAAKAAQESIRNGAPVPEDIKMSESSVRRRYLMVVGINTAFSSRKRRDSVRETWMPQGEKRKKLEEDKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVNLWDADFYIKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLSQKGVRYHEPEFWKFGEAGNKYFRHATGQLYAISKDLATYISINQHVLHKYANEDVSLGSWFIGLDVDHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWTCSGICRSAERIKEVHKRCGEGEKALWNASF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00709 407 Pfam Domain of unknown function (DUF4094) 16 112 IPR025298 -
Cca10g00709 407 Pfam Galactosyltransferase 152 349 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca10g00709 407 PANTHER HEXOSYLTRANSFERASE 8 399 - -
Cca10g00709 407 Coils Coil 93 113 - -
Cca10g00709 407 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 8 399 IPR002659 GO:0006486|GO:0016020|GO:0016758
Cca10g00709 407 Gene3D - 131 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00709 Cca-Chr10 8009530 8013941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00709 1 407 Glycosyltransferase AT1G05170 77.641 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00709 K20855 - gmx:100793931 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00709 10 8009530 8013941 Cca10g00709 10 8009530 8013941 ECH
Cca10g00709 10 8009530 8013941 Cca04g01014 04 11019682 11023953 PCT