Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00600 ATGGGGGAATTCAAACACTTTGTAATTGTTAAGTTCAAGGAAGGTGTGGCGGTTGAAGAGCTCACAAAAGGGATGGAGAAGTTCGTTTCAGAGATTGATGCTGTCAAGTCCTTTGAATGGGGACAGGACATTGAAAGCCTAGATGTGTTGAGACAAGGTTTCACTCATGCCTTCTTGATGACATTCGACAAGAAAGAAGACTTCGTTGCATTTCAGAGCCACCCCAATCATGTCGAGTTCTCCACAAAATTTTCAGCAGCTATAGAGAATATAGTGCTGCTGGATTTCCCATCTACTCTTGTCAAGGCCCCAGCATGA 318 0.4371 MGEFKHFVIVKFKEGVAVEELTKGMEKFVSEIDAVKSFEWGQDIESLDVLRQGFTHAFLMTFDKKEDFVAFQSHPNHVEFSTKFSAAIENIVLLDFPSTLVKAPA 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00600 105 PANTHER EXPRESSED PROTEIN 1 104 - -
Cca10g00600 105 SUPERFAMILY Dimeric alpha+beta barrel 2 98 IPR011008 -
Cca10g00600 105 PANTHER - 1 104 IPR044662 -
Cca10g00600 105 Pfam Stress responsive A/B Barrel Domain 5 97 IPR013097 -
Cca10g00600 105 SMART Dabb_2 4 98 IPR013097 -
Cca10g00600 105 Gene3D - 2 105 - -
Cca10g00600 105 ProSiteProfiles Stress-response A/B barrel domain profile. 4 96 IPR013097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00600 Cca-Chr10 6558893 6560256 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00600 - - gmx:100306664 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00600 10 6558893 6560256 Cca10g00600 10 6558893 6560256 ECH
Cca10g00600 10 6558893 6560256 Cca04g00888 04 9371171 9372663 PCT