Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00545 ATGCCCATGCTCAGTGTGATCAGCAGCAAAAAGAAAAGCGTAGGAGGCATTGTGAAGTTCAAATTGGTGATTGAAAAGCTCCAGAAGAGACTCCTACTGGGGAGAAACAAAGAAGGGTGTGATTCAAATTCAACGTACGTGCCAAAGGATGTGAAGGAAGGACACTTCGCTGTGATTGCCGAGTGTGGAGAGGAACAAAAGAGGTTCGTGCTTCCACTAAGTTGCTTAACCAACCCTACGTTTTTGAAGCTATTGGAGCAAGCAGAAGAAGAGTACGGCTTTGATCATGAAGGTGCAGTCACCATTCCTTGCAGGCCTAGTGAACTTGAGAGGATACTGTCAAACCAATGCATGCCATCAAACTACTGGACTAAGCTCGACTTGTAG 387 0.4574 MPMLSVISSKKKSVGGIVKFKLVIEKLQKRLLLGRNKEGCDSNSTYVPKDVKEGHFAVIAECGEEQKRFVLPLSCLTNPTFLKLLEQAEEEYGFDHEGAVTIPCRPSELERILSNQCMPSNYWTKLDL 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00545 128 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 23 116 - -
Cca10g00545 128 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 23 116 IPR003676 GO:0009733
Cca10g00545 128 Pfam Auxin responsive protein 37 114 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00545 Cca-Chr10 5881646 5882214 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00545 27 104 Calmodulin-binding Proteins AT3G43120 46.429 1.11e-15 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00545 - K14488 gmx:102668167 186.422
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00545 10 5881646 5882214 Cca10g00545 10 5881646 5882214 ECH
Cca10g00545 10 5881646 5882214 Cca04g00825 04 8459195 8460048 PCT