Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00488 ATGCAGACCCAAAAGACAAGGAGTAGCTCCTCTGAGGCGCCTCAGAAAGTGTCTCCTCGTGGTGGACGCCAACTGAGGCCTACTACACTAGACACTGCATCTTCATTAAACCAAGCTAATAAGACATCAAAGGAGAGAAGTCCCAAAATCACTGATCGTAGATCACCCAGAAGCCCTGCACCGGAGAGGAAGCGTCCTAGCAGAATATCTGAATTGGAATCTCAGATTTCTCAACTCAAAGACGATTTGAAGGTGGTGAGGAACCAACTCAGTTTGTCTGATTCAGGCAAGAAGCAGGCTCAGCAAGATGCTGAAGAGTCCAAGAAGCAACTAGCTTCCCTATCTGTGAAACTTGAAGATTCTCAACAGCAACTTCTGAAGTTCTCTGCTGCAGAACAAGCTCGTGTTATTGAGCTCCAGAAAACTATAGAAGAGCATGATAAGGCGTGGCAATCTGAGCTGAGGGCTGCACAACAGAAACTCTCAGACAACACTGCTGCATTAACCTCTGCTATCAATGAAATTCAGCAGCTCAAAGTTCAGCTTGAATTGGTAGCTAATTGTGAGAATGCACACACACAAATTGCTGAATCATCAGACGTGGAGCTACTGAACTTGAAGGATAACTTGGCAGAGTCTCTTTCACTTGTAGAGAACATGAAAAACCAACTCAGAGATTCCAAAGAGTCAGTTCAGGCACAAGCTTTGGTCAATGAGACTTTGCGGCAACTTGAGGCTGCAAAGAGAACTGTTGAGTTCCTGAGAGCTGATGCTGCAAAAGCTGTGCATGGCTACAACTCTGCTGCTTTGGAGTTAGACCAATCTAGAGCACGAGTGAACTCACTAGAGGCACTAGTAAGCAAACTTGAGTTTGGCCTCATTAGTAACAAAAGCAACAATTCTGTAAATCTTGCAGATGGTGGTAACATGGAGTTGAAAGCTGAGATATTACAAAAGGGTGAGGGTGAGGATGCTAATCACATTGAAGCAGAAATTTATTCTTTGAGGTCTGAGGTAGGACAATTGAGGTATGCCATAGAGACTGCTGAGGCCAAATACCGGGAAGAACAGATAGAGTGTTCGGTGAAGATCACAAAAGCCTACGAGTTGATTGAACAGATAACATCAGAATCAAGCCAGAGGGAATCCGAGCTAGAGGCTGAACTGAAGAGAAAGAAAACTGATATTGAAGAGTTGAAGGCAAACCTAATGGATAAGGAAACTGAGTTGCAAGGCATTGTAGAGGAGAATGAGAAGCTGAATTTGCAGCTTGAGAAGAACATGTCATCACAAAGAGAACATGAACTTAGAAAGGAGCTTAGAAAACTAGACGAATGCGTGGCCGGGTTGAAGGCTGATCTGATGGACAAGGAAACAACACTGCAAAGCATATCTGAAGAGAATGAAATGCTGAAGTTGGAGATCAGTAAGAGGTATGCACGTGCTGAACTTGAGGCAGCCAAGGCTGCAGAACGTGAGGCTGTTATGAGACTTGGTATTGTGATGGAAGATGCCGAAAGGAGCAACCGTAAGGCGGTGAGGGTGGCGGAGCAGTTGGAAGCCTCGCAAGCGGCGAATTCGATAATAGAAGCAGAACTAAGAAGATTGAAGGTGCAGTCTGATCAATGGAGGAAGGCTGCAGAGGCTGCTGCTGCTATGCTCTCAGCAGGGAACAATGGGAAGCTTGCTGAGAGGTCATTGTCTTTGGACAACAACTATAACTCTGTAATGAATAAGTACACACCTTTTTGTGAAGAGCTTGATGATGATTTTCAGACTAAGAAAAATGGAAACATGCTCAAGAAGATTGGGGTTTTGTGGAGGAAACCTCAAAAATAG 1839 0.4454 MQTQKTRSSSSEAPQKVSPRGGRQLRPTTLDTASSLNQANKTSKERSPKITDRRSPRSPAPERKRPSRISELESQISQLKDDLKVVRNQLSLSDSGKKQAQQDAEESKKQLASLSVKLEDSQQQLLKFSAAEQARVIELQKTIEEHDKAWQSELRAAQQKLSDNTAALTSAINEIQQLKVQLELVANCENAHTQIAESSDVELLNLKDNLAESLSLVENMKNQLRDSKESVQAQALVNETLRQLEAAKRTVEFLRADAAKAVHGYNSAALELDQSRARVNSLEALVSKLEFGLISNKSNNSVNLADGGNMELKAEILQKGEGEDANHIEAEIYSLRSEVGQLRYAIETAEAKYREEQIECSVKITKAYELIEQITSESSQRESELEAELKRKKTDIEELKANLMDKETELQGIVEENEKLNLQLEKNMSSQREHELRKELRKLDECVAGLKADLMDKETTLQSISEENEMLKLEISKRYARAELEAAKAAEREAVMRLGIVMEDAERSNRKAVRVAEQLEASQAANSIIEAELRRLKVQSDQWRKAAEAAAAMLSAGNNGKLAERSLSLDNNYNSVMNKYTPFCEELDDDFQTKKNGNMLKKIGVLWRKPQK 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00488 612 Coils Coil 69 89 - -
Cca10g00488 612 MobiDBLite consensus disorder prediction 45 74 - -
Cca10g00488 612 Coils Coil 97 124 - -
Cca10g00488 612 MobiDBLite consensus disorder prediction 25 44 - -
Cca10g00488 612 MobiDBLite consensus disorder prediction 1 74 - -
Cca10g00488 612 Coils Coil 454 474 - -
Cca10g00488 612 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 3 1 612 - -
Cca10g00488 612 PANTHER INTERACTOR OF CONSTITUTIVE ACTIVE ROPS 2, CHLOROPLASTIC-RELATED 1 612 IPR029688 -
Cca10g00488 612 Coils Coil 502 539 - -
Cca10g00488 612 Coils Coil 237 257 - -
Cca10g00488 612 Coils Coil 382 423 - -
Cca10g00488 612 Coils Coil 265 285 - -
Cca10g00488 612 Coils Coil 203 234 - -
Cca10g00488 612 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00488 Cca-Chr10 5075922 5082826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00488 - - gmx:100798050 964.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00488 10 5075922 5082826 Cca10g00488 10 5075922 5082826 ECH
Cca10g00488 10 5075922 5082826 Cca04g00737 04 7336773 7343437 PCT