Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00455 ATGGAGATTGATCTCACTCCCCAGTTGCCGAAGGAGCTTTACGGAGGGAATGGTGGGTCCTACCACGCATGGTCCCCCTCTCAGCTTCCCATGCTTGGCCAAGGTAACATTGGTGCCTCCAAGCTCGCTCTTCACACAAATGGATTCGCACTTCCTCGTTATTCTGACTCTTCCAAAGTCGCTTATGTTCTCCAAGGAAGTGGAGTGGCTGGAATAGTGCTGCCTGAGTCAGAAGAGAAGGTTGTTGCGATCAAGAAGGGTGATGCCTTGGCACTGCCCTTTGGTGTTGTGACATGGTGGTATAACAAGGAAGACACTGAGTTGGTTGTTCTGTTCCTTGGAGACACTTCCAAGGCTCACAAGGCTGGTCAATTCACTGACTTTTTTCTAACTGGATCCAATGGAATCTTCACGGGCTTTTCAACTGAGTTTGTGGGCAGGGCTTGGGACTTGGAAGAGAGTGATGTCAAGACCCTTGTTGGAAAACAATCTGGCCAAGGCATTGTGCAGCTGGAAGGAAACATAAGCCTTCCGGAGCCTAAACAGGAGCACCGGGATGGCATGGCCTTGAACTGTGAAGAGGCTCCATTGGATGTTGACATCAAGGGTGGTGGAAGGGTTGTGGTGTTGAACACCAAGAATCTTCCCTTGGTTGGTGAGGTTGGACTAGGGGCTGATCTCGTGAGGTTGGATGGAAGTGCTATGTGTTCTCCAGGATTCTCTTGTGATTCTGCTCTGCAGGTTACTTATATTGTCAGGGGTAGTGGCAGGGTTCAGGTTGTTGGTGTTGATGGTCGTAGGGTTTTGGAGACAACCATACAAGCTGGTAATTTGTTCATTGTGCCAAGGTTCTTTGTGGTCTCAAAGATTGCTGATCCTGAGGGAATGGAGTGGTTCTCTATCATCACCACCCCTAATCCTATATTTACCCACCTGGCTGGAAGTTCTTCTGTGTGGAAGGCTTTATCACCCACGGTTCTACAGGCTGCTTTCAATGTAGATTCAGGAGTTGAGAAACTCTTCCGTTCAAAGAGGACTAACGATGCTGTTTTCTTCCCTCCACCAAAGTAG 1071 0.4883 MEIDLTPQLPKELYGGNGGSYHAWSPSQLPMLGQGNIGASKLALHTNGFALPRYSDSSKVAYVLQGSGVAGIVLPESEEKVVAIKKGDALALPFGVVTWWYNKEDTELVVLFLGDTSKAHKAGQFTDFFLTGSNGIFTGFSTEFVGRAWDLEESDVKTLVGKQSGQGIVQLEGNISLPEPKQEHRDGMALNCEEAPLDVDIKGGGRVVVLNTKNLPLVGEVGLGADLVRLDGSAMCSPGFSCDSALQVTYIVRGSGRVQVVGVDGRRVLETTIQAGNLFIVPRFFVVSKIADPEGMEWFSIITTPNPIFTHLAGSSSVWKALSPTVLQAAFNVDSGVEKLFRSKRTNDAVFFPPPK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00455 356 CDD cupin_11S_legumin_N 4 173 - -
Cca10g00455 356 SMART Cupin_1_3 3 157 IPR006045 -
Cca10g00455 356 SMART Cupin_1_3 195 339 IPR006045 -
Cca10g00455 356 PRINTS 11-S seed storage protein family signature 211 231 IPR006044 GO:0045735
Cca10g00455 356 PRINTS 11-S seed storage protein family signature 258 274 IPR006044 GO:0045735
Cca10g00455 356 PRINTS 11-S seed storage protein family signature 276 291 IPR006044 GO:0045735
Cca10g00455 356 PRINTS 11-S seed storage protein family signature 294 312 IPR006044 GO:0045735
Cca10g00455 356 PRINTS 11-S seed storage protein family signature 316 333 IPR006044 GO:0045735
Cca10g00455 356 SUPERFAMILY RmlC-like cupins 9 345 IPR011051 -
Cca10g00455 356 CDD cupin_11S_legumin_C 198 353 - -
Cca10g00455 356 PANTHER - 2 346 - -
Cca10g00455 356 Pfam Cupin 199 335 IPR006045 -
Cca10g00455 356 Pfam Cupin 10 156 IPR006045 -
Cca10g00455 356 Gene3D Jelly Rolls 197 356 IPR014710 -
Cca10g00455 356 Gene3D Jelly Rolls 3 196 IPR014710 -
Cca10g00455 356 PANTHER OS03G0336100 PROTEIN-RELATED 2 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00455 Cca-Chr10 4686281 4689587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00455 35 333 Miscellaneous Gene Families AT2G18540 22.923 1.42e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00455 - - gmx:100795038 640.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00455 10 4686281 4689587 Cca10g00455 10 4686281 4689587 ECH
Cca10g00455 10 4686281 4689587 Cca04g00690 04 6742320 6744646 PCT