Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00440 atggctgctccaccggcaagggctcgtgcggattatgattatctcataaagcttctcttgattggggatagtgGTGTTGGAAAGAGTTGTCTTCTTCTTCGATTCTCTGATGGTTCTTTCACAACTAGTTTCATCACAACCATAGGCATTGATTTTAAGATAAGAACCATTGAGCAGGATGGAAAACGGATCAAGCTCCAAATTTGGGATACTGCAGGTCAGGAGCGGTTCCGAACAATTACAACTGCTTACTATCGTGGTGCTATGGGCATATTGCTAGTCTATGACGTCACAGACGAATCATCATTTAACAATATCAGGAATTGGATTCGTAACATTGAGCAACATGCTTCAGACAATGTTAACAAAATACTGGTGGGGAACAAAGCCGACATGGATGAAAGCAAAAGGGCTGTCCCTACCTCCAAGGGCCAAGCACTGGCCGATGAGTATGGAATCAAATTCTTTGAAACAAGCGCAAAGACAAATCTAAATGTGGAGGAAGTTTTCTTCTCGATTGCAAGAGATATAAAACAAAGGCTTGCTGACAATGACTCTTCTAAGGCCGAGCCAGCGGGAATTAAAATCAACCAACAAGATCAGGCAACCGCCGGGCAAATTGCACAAAAGTCAGCTTGCTGTGGCTGA 648 0.3812 MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEQDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDIKQRLADNDSSKAEPAGIKINQQDQATAGQIAQKSACCG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00440 215 ProSiteProfiles small GTPase Rab1 family profile. 11 214 - -
Cca10g00440 215 PRINTS Transforming protein P21 ras signature 16 37 - -
Cca10g00440 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Cca10g00440 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Cca10g00440 215 PRINTS Transforming protein P21 ras signature 119 132 - -
Cca10g00440 215 PRINTS Transforming protein P21 ras signature 155 177 - -
Cca10g00440 215 SMART rho_sub_3 18 180 IPR001806 GO:0003924|GO:0005525
Cca10g00440 215 ProSiteProfiles small GTPase Ras family profile. 6 208 IPR001806 GO:0003924|GO:0005525
Cca10g00440 215 TIGRFAM small_GTP: small GTP-binding protein domain 14 170 IPR005225 GO:0005525
Cca10g00440 215 CDD Rab8_Rab10_Rab13_like 13 180 - -
Cca10g00440 215 PANTHER BNAA07G37610D PROTEIN 1 214 - -
Cca10g00440 215 SMART ras_sub_4 17 180 - -
Cca10g00440 215 ProSiteProfiles small GTPase Rho family profile. 9 182 - -
Cca10g00440 215 Pfam Ras family 17 178 IPR001806 GO:0003924|GO:0005525
Cca10g00440 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 184 IPR027417 -
Cca10g00440 215 SMART ran_sub_2 21 215 - -
Cca10g00440 215 Gene3D - 6 213 IPR027417 -
Cca10g00440 215 PANTHER LD44762P 1 214 - -
Cca10g00440 215 SMART rab_sub_5 16 180 - -
Cca10g00440 215 SMART arf_sub_2 1 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00440 Cca-Chr10 4535600 4539650 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00440 K07901 - gmx:100800345 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00440 10 4535600 4539650 Cca10g00440 10 4535600 4539650 ECH
Cca10g00440 10 4535600 4539650 Cca04g00679 04 6656457 6660746 ECH
Cca10g00440 10 4535600 4539650 Cca04g00679 04 6656457 6660746 PCT